Publication Archive

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2017

 

Addison, J. A., J. Barron, B. Finney, D. Bukry, L. Kusler, L. Heusser and C. R. Alexander.  2017. A Holocene record of ocean productivity and upwelling from the northern California continental slope. Quaternary International (pagination pending).  doi: 10.1016/j.quaint.2017.02.021
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Alexander, C. R., and H. L. Windom. 2017.  Material mobilization and transport in the Anadyr River-Estuarine System, eastern Siberia. Journal of Coastal Research 33(3): 548-563.  doi: 10.2112/JCOASTRES-D-16-00044.1    doi: 10.2112/JCOASTRES-D-16-00044.1
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Alexander, C. R., J. Y. S. Hodgson, and J. A. Brandes. 2017. Sedimentary processes and products in a mesotidal salt marsh environment: insights from Groves Creek, Georgia. Geo-Marine Letters 37(4): 345-359.  doi: 10.1007/s00367-017-0499-1
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Arnold, W. S., S. D. Meyers, S. P. Geiger, M. E. Luther, D. Narváez, M. E. Frischer, and E. Hofmann.  2017. Applying a coupled biophysical model to predict larval dispersal and source/sink relationships in a depleted metapopulation of the eastern oyster Crassostrea virginica.    Journal of Shellfish Research 36(1): 101-118.  doi: 10.2983/036.036.0112
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Barber, A., J. Brandes, A. Leri, K. Lalonde, K. Balind, S. Wirick, J. Wang, and Y. Gelinas. 2017. Preservation of organic matter in marine sediments by inner-sphere interactions with reactive iron. Scientific Reports 7: 366 (article number). doi:10.1038/s41598-017-00494-0
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Brandes, J. A.  2017.  Nutrients.  In:  Encyclopedia of Geochemistry, Encyclopedia of Earth Sciences SeriesLiving Reference Work, Continuously updated edition. ed. W. M. White, 1-3.   Springer International Publishing .  doi:  10.1007/978-3-319-39193-9_151-1
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Bray, M. S., J. Wu, B. C. Reed, C. B. Kretz, K. M. Belli, R. L. Simister, C. Henny, F. J. Stewart, T. J. DiChristina, J. A. Brandes, D. A. Fowle, S. A. Crowe, and J. B. Glass. 2017. Shifting microbial communities sustain multiyear iron reduction and methanogenesis in ferruginous sediment incubations. Geobiology 15(5): 678-689.  doi: 10.1111/gbi.12239
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Chang, D., W. C. Wu, C. R. Edwards, and F. M. Zhang.  2017.  Motion tomography: Mapping flow fields using autonomous underwater vehicles. International Journal of Robotics Research 36(3): 320-336.  doi: 10.1177/0278364917698747
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Dittmar, T., A. Stubbins, T. Ito, and D. C. Jones.  2017.  Comment on “Dissolved organic sulfur in the ocean: Biogeochemistry of a petagram inventory.” Science 356 (6340): 813.  doi: 10.1126/science.aam6039
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Fitzsimmons, J. N., S. G. John, C. M. Marsay, C. L. Hoffman, S. L. Nicholas, B. M. Toner, C. R. German, and R. M. Sherrell. 2017. Iron persistence in a distal hydrothermal plume supported by dissolved-particulate exchange.  Nature Geoscience 10(3): 195-201. doi: 10.1038/ngeo2900
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Giering, S. L. C., R. Sanders, A. P. Martin, S. A. Henson, J. S. Riley, C. M. Marsay, and D. G. Johns. 2017. Particle flux in the oceans: Challenging the steady-state assumption. Global Biogeochemical Cycles 31(1): 159-171. doi: 10.1002/2016GB005424
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Khan, A. L., S. Wagner, R. Jaffe, P. Xian, M. Williams, R. Armstrong, and D. McKnight.  2017. Dissolved black carbon in the global cryosphere:  Concentrations and chemical signatures. Geophysical Research Letters  44(12): 6226-6234.  doi: 10.1002/2017GL073485
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Köster, M. and G. -A. Paffenhöfer, G.-A.  2017. How efficiently can doliolids (Tunicata, Thaliacea) utilize phytoplankton and their own fecal pellets? Journal of Plankton Research 39(2): 305-315.  doi: 10.1093/plankt/fbw089
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Paffenhöfer, G. -A. 2017.  How cooperation contributes to scientific advances, ICES Journal of Marine Science (pagination pending), fsx185.  doi: 10.1093/icesjms/fsx185
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Poulin, B. A., J. N. Ryan, K. L. Nagy, A. Stubbins, T. Dittmar, W. Orem, D. P. Krabbenhoft, and G. R. Aiken. 2017. Spatial dependence of reduced sulfur in everglades dissolved organic matter controlled by sulfate enrichment. Environmental Science & Technology 51(7): 3630-3639 doi: 10.1021/acs.est.6b04142
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Powers, L. C., J. A. Brandes, A. Stubbins, and W. L. Miller. 2017. MoDIE: Moderate dissolved inorganic carbon (DI13C) isotope enrichment for improved evaluation of DIC photochemical production in natural waters. Marine Chemistry 194: 1-9.  doi: 10.1016/j.marchem.2017.03.007
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Powers, L. C., J. A. Brandes, W. L. Miller, and A. Stubbins.  2017. Using liquid chromatography‐isotope ratio mass spectrometry to measure the δ13C of dissolved inorganic carbon photochemically produced from dissolved organic carbon. Limnology and Oceanography: Methods 15(1): 103-115.  doi: 10.1002/lom3.10146
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Qu, B., M. Sillanpää, C. Li, S. Kang, A. Stubbins, F.Yan, K. S. Aho, F. Zhou, and P. A. Raymond. 2017. Aged dissolved organic carbon exported from rivers of the Tibetan Plateau. PLoS ONE 12(5): e0178166   doi: 10.1371/journal.pone.0178166
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Qu, B., M. Sillanpää, C. Li, S. Kang, A. Stubbins, F. Yan, K. S. Aho, F. Zhou, and P. A. Raymond. 2017. Correction: Aged dissolved organic carbon exported from rivers of the Tibetan Plateau. PLoS ONE 12(7): e0181295  doi: 10.1371/journal.pone.0181295
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Rossel, P. E., A. Stubbins, T. Rebling, A. Koschinsky, J. A. Hawkes, and T. Dittmar.  2017. Thermally altered marine dissolved organic matter in hydrothermal fluids.  Organic Geochemistry 110:73-86.  doi:  10.1016/j.orggeochem.2017.05.003
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Savidge, D. K., and A. E. Gargett. 2017.  Langmuir supercells on the middle shelf of the South Atlantic Bight: 1. Cell structure.   Journal of Marine Research 75(2):49-79.   doi: 10.1357/002224017821352641
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Stubbins, A, L. M. Silva, T. Dittmar, and J. T. Van Stan.  2017. Molecular and optical properties of tree-derived dissolved organic matter in throughfall and stemflow from live oaks and eastern red cedar. Frontiers in Earth Science 5:22. doi: 10.3389/feart.2017.00022
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Stubbins, A., P. J. Mann, L. Powers, T. B. Bittar, T. Dittmar, C. McIntyre, T. I. Eglinton, N. Zimov, and R. G. M. Spencer. 2017. Low photolability of yedoma permafrost dissolved organic carbon. Journal of Geophysical Research – Biogeosciences 122(1): 200-211. doi: 10.1002/2016JG003688
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Szeinbaum, N., H. Lin, J. A. Brandes, M. Taillefert, J. B. Glass, and T. J. DiChristina. 2017. Microbial manganese(III) reduction fuelled by anaerobic acetate oxidation. Environmental Microbiology 19(9): 3475-3486. doi: 10.1111/1462-2920.13829
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Wagner, S., J. Brandes, A. I. Goranov, T. W. Drake, R. G. M. Spencer, and A. Stubbins.  2017.  Online quantification and compound-specific stable isotopic analysis of black carbon in environmental matrices via liquid chromatography-isotope ratio mass spectrometry.  Limnology and Oceanography: Methods (pagination pending).   doi: 10.1002/lom3.10219
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Winder, M., J.-M. Bouquet, J. R. Bermúdez, S. A. Berger, T. Hansen, J. Brandes, A. F. Sazhin, J. C. Nejstgaard, U. Båmstedt, H. H. Jakobsen, J. Dutz, M. E. Frischer, C. Troedsson, and E. M. Thompson. 2017. Increased appendicularian zooplankton alter carbon cycling under warmer more acidified ocean conditions. Limnology and Oceanography 62(4): 1541-1551.  doi: 10.1002/lno.10516
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2016

Bittar, T. B., S. A. Berger, L. M. Birsa, T. L. Walters, M. E. Thompson, R. G. M. Spencer, E. L. Mann, A. Stubbins, M. E. Frischer, and J. A. Brandes. 2016. Seasonal dynamics of dissolved, particulate and microbial components of a tidal saltmarsh-dominated estuary under contrasting levels of freshwater discharge. Estuarine, Coastal and Shelf Science 182 (Part A): 72-85. doi: 10.1016/j.ecss.2016.08.046
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Cawley, K. M., A. E. Murray, P. T. Doran, F. Kenig, A. Stubbins, H. Chen, P. G. Hatcher, and D. M. McKnight. 2016. Characterization of dissolved organic material in the interstitial brine of Lake Vida, Antarctica. Geochimica et Cosmochimica Acta 183:63-78. doi: 10.1016/j.gca.2016.03.023
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Ceballos-Romero, E., F. A. C. Le Moigne, S. Henson, C. M. Marsay, R. Sanders, R. Garcia-Tenorio, and M. Villa-Alfageme. 2016. Influence of bloom dynamics on Particle Export Efficiency in the North Atlantic: a comparative study of radioanalytical techniques and sediment traps.  Marine Chemistry 186:198-210.  doi: 10.1016/j.marchem.2016.10.001
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Chambers, L. R., E. D. Ingall, E. M. Saad, A. F. Longo, M. Takeuchi, Y. Tang, C. Benitez-Nelson, S. T. Haley, S. T. Dyhrman, J. Brandes, and A. Stubbins. 2016. Enhanced dissolved organic matter recovery from saltwater samples with electrodialysis. Aquatic Geochemistry 22 (5-6, Special Issue): 555-572.  doi: 10.1007/s10498-016-9306-2
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Cho, S., F. M. Zhang, and C. R. Edwards.  2016.  Adaptive learning for controlled Lagrangian particle tracking.  2016 MTS/IEEE Oceans Conference, Monterey, CA. September 19-23, 2016.  doi: 10.1109/OCEANS.2016.7761393
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Diaz, J. M., C. M. Hansel, A. Apprill, C. Brighi, T. Zhang, L. Weber, S. McNally, and L. P. Xun.  2016.  Species-specific control of external superoxide levels by the coral holobiont during a natural bleaching event.  Nature Communications 7 (13801).  doi: 10.1038/ncomms13801
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Diaz, J. M., K. M. Bjorkman, S. T. Haley, E. D. Ingall, D. M. Karl, A. F. Longo, and Dyhrman, S. T. 2016.  Polyphosphate dynamics at Station ALOHA, North Pacific subtropical gyre.  Limnology and Oceanography 61(1): 227-239.  doi:  10.1002/lno.10206
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Gargett, A. E., and D. K. Savidge.  2016.  Separation of short time series of currents into “fluctuations,” “tides,” and “mean” flow.  Journal of Atmospheric and Oceanic Technology 33(5): 1089-1095.  doi: 10.1175/JTECH-D-15-0232.1
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Hansel, C. M., C. Buchwald, J. M. Diaz, J. E. Ossolinski, S. T. Dyhrman, B. A. S. Van Mooy, and D. Polyviou. 2016. Dynamics of extracellular superoxide production by Trichodesmium colonies from the Sargasso Sea. Limnology and Oceanography 61(4): 1188-1200. doi: 10.1002/lno.10266
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Harvey, E. L., R. W. Deering, D. C. Rowley, A. El Gamal, M. Schorn, B. S. Moore, M. D. Johnson, T. J. Mincer, and K. E. Whalen. 2016. A bacterial quorum-sensing precursor induces mortality in the marine coccolithophore, Emiliania huxleyi. Frontiers in Microbiology 7:59. doi: 10.3389/fmicb.2016.00059
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Hawkes, A. D., A. C. Kemp, J. P. Donnelly, B. P. Horton, W. R. Peltier, N. Cahill, D. F. Hill, E. Ashe, and C. R. Alexander. 2016. Relative sea-level change in northeastern Florida (USA) during the last ~8.0 ka. Quaternary Science Reviews 142:90-101. doi: 10.1016/j.quascirev.2016.04.016
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Kaal, J., S. Wagner, and R. Jaffe.  2016.  Molecular properties of ultrafiltered dissolved organic matter and dissolved black carbon in headwater streams as determined by pyrolysis-GC-MS.  Journal of Analytical and Applied Pyrolysis 118:181-191.  doi: 10.1016/j.jaap.2016.02.003
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Kuehl, S. A., C. R. Alexander, N. E. Blair, C. K. Harris, K. M. Marsaglia, A. S. Ogston, A. R. Orpin, J. J. Roering, A. J. Bever, E. L. Bilderback, L. Carter, C. Cerovski-Darriau, L. B. Childress, D. R. Corbtt, R. P. Hale, E. L. Leithold, Litchfield, N., J. M. Moriarty, M. J. Page, L. E. R. Pierce, P. Upton, and J. P. Walsh. 2016. A source-to-sink perspective of the Waipaoa River margin.  Earth-Science Reviews 153: 301-334.  10.1016/j.earscirev.2015.10.001
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Leal, M. C., C. Ferrier-Pages, D. Petersen, and R. Osinga.  2016.  Coral aquaculture: applying scientific knowledge to ex situ production.  Reviews in Aquaculture 8(2): 136-153.  doi: 10.1111/raq.12087
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Moran, M. A., E. B. Kujawinski, A. Stubbins, R. Fatland, L. I. Aluwihare, A. Buchan, B. C. Crump, P. C. Dorrestein, S. T. Dyhrman, N. J. Hess, B. Howe, K. Longnecker, P. M. Medeiros, J. Niggemann, I. Obernosterer, D. J. Repeta, and J. R. Waldbauer. 2016. Deciphering ocean carbon in a changing world. Proceedings of the National Academy of Sciences of the United States of America 113(12): 3143-3151. doi:10.1073/pnas.1514645113
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Paffenhöfer, G. -A., and H. Jiang. 2016. Comment:  On phytoplankton perception by calanoid copepods. Limnology and Oceanography 61(4): 1163-1168. doi: 10.1002/lno.10294
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Poulson-Ellestad, K. L., E. L. Harvey, M. D. Johnson, and T. Mincer. 2016. Evidence for strain-specific exometabolomic responses of the coccolithophore Emiliania huxleyi to grazing by the dinoflagellate Oxyrrhis marina. Frontiers in Marine Science 3:1. doi: 10.3389/fmars.2016.00001
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Powers, L. C., and W. L. Miller.  2016. Apparent quantum efficiency spectra for superoxide photoproduction and its formation of hydrogen peroxide in natural waters.  Frontiers in Marine Science 3: 235.  doi: 10.3389/fmars.2016.00235e
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Pree, B., C. Kuhlisch, G. Pohnert, A. F. Sazhin, H. H. Jakobsen, M. L. Paulsen, M. Lund, M. E. Frischer, D. Stoecker, JC. Nejstgaard, and A. Larsen.  2016.  A simple adjustment to test reliability of bacterivory rates derived from the dilution method.  Limnology and Oceanography-Methods 14(2): 114-123.  doi: 10.1002/lom3.10076
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Ray, J. L., J. Althammer, K. S. Skaar, P. Simonelli, A. Larsen, D. Stoecker, A. Sazhin, U. Z. Ijaz, C. Quince, J. C. Nejstgaard, M. Frischer, G. Pohnert, and C. Troedsson.  2016.  Metabarcoding and metabolome analyses of copepod grazing reveal feeding preference and linkage to metabolite classes in dynamic microbial plankton communities.  Molecular Ecology 25(21): 5585-5602.  doi: 10.1111/mec.13844
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Rogan, N., E. P. Achterberg, F. A. C. Le Moigne, C. M. Marsay, A. Tagliabue, and R. G. Williams.  2016.  Volcanic ash as an oceanic iron source and sink.  Geophysical Research Letters 43(6): 2732-2740.  doi: 10.1002/2016GL067905
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Saad, E. M., A. F. Longo, L. R. Chambers, R. Huang, C. Benitez-Nelson, S. T. Dyhrman, J. M. Diaz, Y. Tang, and E. D. Ingall. 2016. Understanding marine dissolved organic matter production: Compositional insights from axenic cultures of Thalassiosira pseudonanaLimnology and Oceanography 61(6): 2222-2233.  doi: 10.1002/lno.10367
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Savidge, D. K. 2016. Comment on: Structure, transport, and vertical coherence of the Gulf Stream from the Straits of Florida to the Southeast Newfoundland Ridge, by Meinen and Luther. Deep-Sea Research Part I-Oceanographic Research Papers 112:155-157.   doi: 10.1016/j.dsr.2016.02.005
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Savidge, W. B., A. Wilson, and G. Woodward.  2016.  Using a thermal proxy to examine sediment—water exchange in mid-continental shelf sandy sediments. Aquatic Geochemistry 22(5-6) (Special Issue): 419-441.  doi: 10.1007/s10498-016-9295-1
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Savidge, W. B., J. Brink, and J. O. Blanton. 2016. Limited influence of urban stormwater runoff on salt marsh platform and marsh creek oxygen dynamics in coastal Georgia.  Environmental Management 58(6): 1074-1090.  doi:  10.1007/s00267-016-0761-8
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Schaffner, L. C., T. W. Hartley, and J. G. Sanders. 2016. Moving forward: 21st century pathways to strengthen the ocean science workforce through graduate education and professional development. Oceanography 29(1): 36-43.  doi: http://doi.org/10.5670/oceanog.2016.09
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Stubbins, A. 2016. A carbon for every nitrogen. Proceedings of the National Academy of Sciences of the United States of America 113(39): 10736-10738. doi: 10.1073/pnas.1612995113
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Wakeham, S. G., and E. A. Canuel. 2016. Biogenic polycyclic aromatic hydrocarbons in sediments of the San Joaquin River in California (USA), and current paradigms on their formation. Environmental Science and Pollution Research 23(11): 10426-10442. doi: 10.1007/s11356-015-5402-x
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Wakeham, S. G., and E. A. Canuel. 2016. The nature of organic carbon in density-fractionated sediments in the Sacramento-San Joaquin River Delta (California). Biogeosciences 13(2): 567-582. doi:10.5194/bg-13-567-2016
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Wilson, A. M., G. L. Woodward, and W. B. Savidge.  2016. Using heat as a tracer to estimate the depth of rapid porewater advection below the sediment—water interface.  Journal of Hydrology 538:743-753.  doi: 10.1016/j.jhydrol.2016.04.047
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Zhu, C., S. G. Wakeham, F. J. Elling, A. Basse, G. Mollenhauer, G. J. M. Versteegh, M. Konneke, and K. U. Hinrichs. 2016.  Stratification of archaeal membrane lipids in the ocean and implications for adaptation and chemotaxonomy of planktonic archaea.  Environmental Microbiology 18(12): 4324-4336.  doi: 10.1111/1462-2920.13289
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2015

Bittar, T. B., A. A. H. Vieira, A. Stubbins, and K. Mopper. 2015. Competition between photochemical and biological degradation of dissolved organic matter from the cyanobacteria Microcystis aeruginosaLimnology and Oceanography 60(4): 1172-1194. doi: 10.1002/lno.10090
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Bittar, T. B., A. Stubbins, A. A. H. Vieira, and K. Mopper. 2015. Characterization and photodegradation of dissolved organic matter (DOM) from a tropical lake and its dominant primary producer, the cyanobacteria Microcystis aeruginosaMarine Chemistry 177, Part 2: 205-217. doi: 10.1016/j.marchem.2015.06.016
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Breitbart, M., B. E. Benner, P. E. Jernigan, K. Rosario, L. M. Birsa, R. C. Harbeitner, S. Fulford, C. Graham, A. Walters, D. B. Goldsmith, S. A. Berger, J. C. Nejstgaard.  2015.  Discovery, prevalence, and persistence of novel circular single-stranded DNA viruses in the ctenophores Mnemiopsis leidyi and Beroe ovateFrontiers in Microbiology 6:1427.  doi: 10.3389/fmicb.2015.01427
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Buck, C. S., C. R. Hammerschmidt, K. L. Bowman, G. A. Gill, and W. M. Landing. 2015. Flux of total mercury and methylmercury to the northern Gulf of Mexico from U.S. estuaries. Environmental Science & Technology 49:13992-13999. doi: 10.1021/acs.est.5b03538
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Chang, D., F. M. Zhang, and C. R. Edwards. 2015. Real-time guidance of underwater gliders assisted by predictive ocean models.  Journal of Atmospheric and Oceanic Technology 32(3): 562-578.  doi: 10.1175/JTECH-D-14-00098.1
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Diaz, J. M., K. M. Bjorkman, S. T. Haley, E. D. Ingall, D. M. Karl, A. F. Longo, and S. T. Dyhrman. 2015. Polyphosphate dynamics at Station ALOHA, North Pacific subtropical gyre. Limnology and Oceanography 61(1): 227-239. doi: 10.1002/lno.10206
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Dupont, C. L., J. P. McCrow, R. Valas, A. Moustafa, N. Walworth, U. Goodenough, R. Roth, S. L. Hogle, J. Bai, Z. I. Johnson, E. Mann, B. Palenik, K. A. Barbeau, J. C. Venter, and A. E. Allen. 2015.  Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities.  ISME Journal 9(5): 1076-1092.  doi: 10.1038/ismej.2014.198
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Fellman, J. B., E. Hood, P. A. Raymond, A. Stubbins, and R. G. M. Spencer. 2015. Spatial variation in the origin of dissolved organic carbon in snow on the Juneau Icefield, Southeast Alaska. Environmental Science & Technology 49(19): 11492-11499. doi: 10.1021/acs.est.5b02685
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French, D. W., C. Huguet, C. Turich, S. G. Wakeham, L. T. Carlson, and A. E. Ingalls. 2015. Spatial distributions of core and intact glycerol dialkyl glycerol tetraethers (GDGTs) in the Columbia River basin and Willapa Bay, Washington: Insights into origin and implications for the BIT index. Organic Geochemistry 88:91-112. doi: 10.1016/j.orggeochem.2015.09.001
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Gambill, J. M., A. E. Doyle, R. F. Lee, P. J. Geer, A. N. Walker, L. G. Parker, and M. E. Frischer.  2015.  The mystery of black gill: shrimpers in the South Atlantic face off with a cryptic parasite. Current: The Journal of Marine Education 29: 2-8
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Gong, Y., R. He, G. G. Gawarkiewicz, and D. K. Savidge. 2015. Numerical investigation of coastal circulation dynamics near Cape Hatteras, North Carolina, in January 2005. Ocean Dynamics 65(1): 1-15. doi: 10.1007/s10236-014-0778-6
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Grand, M. M., C. I. Measures, M. Hatta, W. T. Hiscock, C. S. Buck, and W. M. Landing. 2015. Dust deposition in the eastern Indian Ocean: The ocean perspective from Antarctica to the Bay of Bengal. Global Biogeochemical Cycles 29(3): 357-374. doi: 10.1002/2014GB004898
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Grand, M. M., C. I. Measures, M. Hatta, W. T. Hiscock, W. M. Landing, P. L. Morton, C. S. Buck, P. M. Barett, and J. A. Resing. 2015. Dissolved Fe and Al in the upper 1000m of the eastern Indian Ocean: A high-resolution transect along 95°E from the Antarctic margin to the Bay of Bengal. Global Biogeochemical Cycles 29(3): 375-396. doi: 10.1002/2014GB004920
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Gwiazda, R., C. K. Paull, W. Ussler III, and C. R. Alexander. 2015. Evidence of modern fine-grained sediment accumulation in the Monterey Fan from measurements of the pesticide DDT and its metabolites. Marine Geology 363:125-133. doi: 10.1016/j.margeo.2015.02.006
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Hammerstein, H. C., P. A. Work, and M. E. Frischer.  2015.  Bacteriophage tracer for fecal contamination sources in coastal waters.  Water Quality Exposure and Health 7(1): 15-26.  doi: 10.1007/s12403-013-0104-4
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Harvey, E. L., K. D. Bidle, and M. D. Johnson. 2015. Consequences of strain variability and calcification in Emiliania huxleyi on microzooplankton grazing. Journal of Plankton Research 37(6): 1137-1148. doi: 10.1093/plankt/fbv081
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Harvey, E., S. Menden-Deuer, and T. A. Rynearson. 2015. Persistent intra-specific variation in genetic and behavioral traits in the raphidophyte, Heterosigma akashiwoFrontiers in Microbiology 6:1277. doi: 10.3389/fmicb.2015.01277
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Hauer, M. E., J. M. Evans, and C. R. Alexander. 2015. Sea-level rise and sub-county population projections in coastal Georgia. Population and Environment 37(1): 44-62. doi: 10.1007/s11111-015-0233-8
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Hawkes, J. A., P. E. Rossel, A. Stubbins, D. Butterfield, D. P. Connelly, E. P. Achterberg, A. Koschinsky, V. Chavagnac, C. T. Hansen, W. Bach, and T. Dittmar. 2015. Efficient removal of recalcitrant deep-ocean dissolved organic matter during hydrothermal circulation. Nature Geoscience 8:856-860. doi: 10.1038/ngeo2543
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Helms, J. R., J. Mao, H. Chen, E. M. Perdue, N. W. Green, P. G. Hatcher, K. Mopper, and A. Stubbins. 2015. Spectroscopic characterization of oceanic dissolved organic matter isolated by reverse osmosis coupled with electrodialysis. Marine Chemistry 177, Part 2: 278-287. doi: 10.1016/j.marchem.2015.07.007
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Huang, W. -J., W. -J. Cai, Y. Wang, X. Hu, B. Chen, S. E. Lohrenz, S. Chakraborty, R. He, J. Brandes, and C. S. Hopkinson. 2015. The response of inorganic carbon distributions and dynamics to upwelling-favorable winds on the northern Gulf of Mexico during summer. Continental Shelf Research 111:211-222.  doi: 10.1016/j.csr.2015.08.020
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Hunter, E. A., N. P. Nibbelink, C. R. Alexander, K. Barrett, L. F. Mengak, R. K. Guy, C. T. Moore, and R. J. Cooper. 2015. Coastal vertebrate exposure to predicted habitat changes due to sea level rise. Environmental Management 56(6): 1528-1537. doi: 10.1007/s00267-015-0580-3
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Kopf, A., M. Bicak, R. Kottmann, J. Schnetzer, I. Kostadinov, K. Lehmann, A. Fernandez-Guerra, C. Jeanthon, E. Rahav, M. Ullrich, A. Wichels, G. Gerdts, P. Polymenakou, G. Kotoulas, R. Siam, R. Z. Abdallah, E. C. Sonnenschein, T. Cariou, F. O’Gara, S. Jackson, S. Orlic, M. Steinke, J. Busch, B. Duarte,I. Cacador, J. Canning-Clode, O. Bobrova, V. Marteinsson, E. Reynisson, C. M. Loureiro, G. M. Luna, G. M. Quero, C. R. Loscher, A. Kremp, M. E. DeLorenzo, L. Ovreas, J. Tolman, J. LaRoche, A. Penna, M. Frischer, T. Davis, B. Katherine, C. P. Meyer, S. Ramos, C. Magalhaes, F. Jude-Lemeilleur, M. L. Aguirre-Macedo, S. Wang, N. Poulton, S. Jones, R. Collin, J. A. Fuhrman, P. Conan, C. Alonso, N. Stambler, K. Goodwin, M. M. Yakimov, F. Baltar, L. Bodrossy, J. Van De Kamp, D. M. Frampton, M. Ostrowski, P. Van Ruth, P. Malthouse, S. Claus, K. Deneudt, J. Mortelmans, S. Pitois, D. Wallom, I. Salter, R. Costa, D. C. Schroeder, M. M. Kandil, V. Amaral, F. Biancalana, R. Santana, M. L. Pedrotti, T. Yoshida, H. Ogata, T. Ingleton, K. Munnik, N. Rodriguez-Ezpeleta, V. Berteaux-Lecellier, P. Wecker, I. Cancio, D. Vaulot, C. Bienhold, H. Ghazal, B. Chaouni, S. Essayeh, S. Ettamimi, E. H. Zaid, N. Boukhatem, A. Bouali, R. Chahboune, S. Barrijal, M. Timinouni, F. El Otmani, M. Bennani, M. Mea, N. Todorova, V. Karamfilov, P. Ten Hoopen, G. Cochrane, S. L’Haridon, K. C. Bizsel, A. Vezzi, F. M. Lauro, P. Martin, R. M. Jensen, J. Hinks, S. Gebbels, R. Rosselli, F. De Pascale, R. Schiavon, A. Dos Santos, E. Villar, S. Pesant, B. Cataletto, F. Malfatti, R. Edirisinghe, J. A. H. Silveira, M. Barbier, V. Turk, T. Tina, W. J. Fuller, I. Salihoglu, N. Serakinci, M. C. Ergoren, E. Bresnan, J. Iriberri, P. A. F. Nyhus, E. Bente, H. E. Karlsen, P. N. Golyshin, J. M. Gasol, S. Moncheva, N. Dzhembekova, Z. Johnson, C. D. Sinigalliano, M. L. Gidley, A. Zingone, R. Danovaro, G. Tsiamis, M. S. Clark, A. C. Costa, M. El Bour, A. M. Martins, R. E. Collins, A.-L. Ducluzeau, J. Martinez, M. J. Costello, L. A. Amaral-Zettler, J. A. Gilbert, N. Davies, D. Field, and F. O. Glockner.  2015.  The ocean sampling day consortium. GigaScience 4:27-27.  doi: 10.1186/s13742-015-0066-5
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Kuehl, S. A., C. R. Alexander, N. E. Blair, C. K. Harris, K. M. Marsaglia, A. S. Ogston, A. R. Orpin, J. J. Roering, A. J. Bever, E. L. Bilderback, L. Carter, C. Cerovski-Darriau, L. B. Childress, D. R. Corbett, R. P. Hale, E. L. Leithold, N. Litchfield, J. M. Moriarty, M. J. Page, L. E. R. Pierce, P. Upton, and J. P. Walsh. 2015. A source to sink perspective of the Waipaoa River margin. Earth-Science Reviews 153:301-334. doi: 10.1016/j.earscirev.2015.10.001
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Leal, M. C., and R. Calado.  2015.  Marine natural products:  Biodiscovery, biodiversity, and bioproduction.  In  Bioactive Natural Products: Chemistry and Biology, ed. Goutam Brahmachari, 473-490.  John Wiley & Sons, Incorporated.

Leal, M. C., B. Jesus, J. Ezequiel, R. Calado, R. J. M. Rocha, P. Cartaxana, and J. Serodio.  2015. Concurrent imaging of chlorophyll fluorescence, Chlorophyll a content and green fluorescent proteins-like proteins of symbiotic cnidarians.  Marine Ecology—An Evolutionary Perspective 36(3): 572-584.  doi: 10.1111/maec.12164
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Lee, R. F., and D. P. Sanders.  2015.  The amount and accumulation rate of plastic debris on marshes and beaches on the Georgia coast.  Marine Pollution Bulletin 91(1): 113-119.  doi: 10.1016/j.marpolbul.2014.12.019
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Logvinova, C. L., K. E. Frey, P. J. Mann, A. Stubbins, and R. G. M. Spencer. 2015. Assessing the potential impacts of declining arctic sea ice cover on the photochemical degradation of dissolved organic matter in the Chukchi and Beaufort seas. Journal of Geophysical Research: Biogeosciences 120(11): 2326-2344. doi: 10.1002/2015jg003052
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Marsico, R. M., R. J. Schneider, B. M. Voelker, T. Zhang, J. M. Diaz, C. M. Hansel, and S. Ushijima. 2015. Spatial and temporal variability of widespread dark production and decay of hydrogen peroxide in freshwater. Aquatic Sciences 77(4): 523-533. doi: 10.1007/s00027-015-0399-2
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Mopper, K., D. Kieber, and A. Stubbins. 2015. Marine photochemistry of organic matter: processes and impacts. In Biogeochemistry of Marine Dissolved Organic Matter (Second Edition), ed. Dennis A. Hansell, and Craig A. Carlson, 389-450. Academic Press, Burlingtondoi: 10.1016/B978-0-12-405940-5.00008-X
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Niencheski, L. F. H., and H. L. Windom.  2015.  Chemistry of a surficial aquifer of a large coastal lagoon barrier and its relation to adjacent surface waters of Brazil.  Journal of Coastal Research 31(6): 1417-1428.  doi: 10.2112/JCOASTRES-D-13-00175.1
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Quintana, C. O., de Moraes, P. C., Yoshinaga, M. Y., Wakeham, S. G. and Sumida, P. Y. G. 2015. Microbial biomass response to different quantities and sources of organic matter in Brazilian coastal sediments. Marine Ecology 36:766–779. doi: 10.1111/maec.12182
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Rachal, D. M., G. S. Okin, C. R. Alexander, J. E. Herrick, and D. P. C. Peters. 2015. Modifying landscape connectivity by reducing wind driven sediment redistribution, Northern Chihuahuan Desert, USA. Aeolian Research 17:129-137. doi: 10.1016/j.aeolia.2015.03.003
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Repeta, D. J., L. Aluwihare, C. Carlson, Z. Liu, C. Nelson, and A. Stubbins. 2015. Introduction to the special issue on the Biogeochemistry of Dissolved Organic Matter. Marine Chemistry 177, Part 2: 203-204. doi: 10.1016/j.marchem.2015.10.002
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Rocha, R. J. M., B. Bontas, P. Cartaxana, M. C. Leal, J. M. Ferreira, R. Rosa, J. Serodio, and R. Calado.  2015.  Development of a standardized modular system for experimental coral culture.  Journal of the World Aquaculture Society 46(3): 235-251.  doi: 10.1111/jwas.12186
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Rossel, P. E., A. Stubbins, P. F. Hach, and T. Dittmar. 2015. Bioavailability and molecular composition of dissolved organic matter from a diffuse hydrothermal system. Marine Chemistry 177, Part 2: 257-266. doi: 10.1016/j.marchem.2015.07.002
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Scharler, U. M., R. E. Ulanowicz, M. Fogel, M. Wooller, M. Jacobson-Meyers, C. Lovelock, I. Feller, M. Frischer, R. Lee, K. McKee, S. Joye, J. Schmit, C. Shearer, and I. Romero. 2015. Variable nutrient stoichiometry (C:N:P) across trophic levels determines extent of nutrient limitations, transfer efficiencies and recycling in a mangrove ecosystem, Belize. Oecologia 179:863-876. doi: 10.1007/s00442-015-3379-2
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Spencer, R. G. M., P. J. Mann, T. Dittmar, T. I. Eglinton, C. McIntyre, R. M. Holmes, N. Zimov, and A. Stubbins. 2015. Detecting the signature of permafrost thaw in Arctic rivers. Geophysical Research Letters 42(8): 2830-2835. doi: 10.1002/2015GL063498
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Stubbins, A., and T. Dittmar. 2015. Illuminating the deep: Molecular signatures of photochemical alteration of dissolved organic matter from North Atlantic Deep Water. Marine Chemistry 177, Part 2: 318-324. doi: 10.1016/j.marchem.2015.06.020
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Stubbins, A., R. Spencer, P. J. Mann, R. M. Holmes, J. McClelland, J. Niggemann, and T. Dittmar. 2015. Utilizing colored dissolved organic matter to derive dissolved black carbon export by Arctic rivers. Frontiers in Earth Science 3:63. doi: 10.3389/feart.2015.00063
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Sullivan, J. C., R. Torres, A. Garrett, J. Blanton, C. Alexander, M. Robinson, T. Moore, J. Amft, and D. Hayes.  2015.  Complexity in salt marsh circulation for a semienclosed basin.  Journal of Geophysical Research – Earth Surface 120(10): 1973-1989.  doi: 10.1002/2014JF003365
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Tait, Z. S., M. Thompson, and A. Stubbins. 2015. Chemical fouling reduction of a submersible steel spectrophotometer in estuarine environments using a sacrificial zinc anode. Journal of Environmental Quality 44(4): 1321-1325. doi: 10.2134/jeq2014.11.0484
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Van Stan, J. T., II, A. Stubbins, T. Bittar, J. S. Reichard, K. A. Wright, and R. B. Jenkins.  2015.  Tillandsia usneoides (L.) L. (Spanish moss) water storage and leachate characteristics from two maritime oak forest settings. Ecohydrology 8(6): 988-1004.  doi:  10.1002/eco.1549
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Wagner, S., R. Jaffe, K. Cawley, T. Dittmar, and A. Stubbins. 2015. Associations between the molecular and optical properties of dissolved organic matter in the Florida Everglades, a model coastal wetland system. Frontiers in Chemistry 3: 66. doi: 10.3389/fchem.2015.00066
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2014

Barrett, P. M., J. A. Resing, N. J. Buck, R. A. Feely, J. L. Bullister, C. S. Buck, and W. M. Landing. 2014. Calcium carbonate dissolution in the upper 1000m of the eastern North Atlantic. Global Biogeochemical Cycles 28(4): 386-397. doi: 10.1002/2013GB004619
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Berger, S. A., S. Diehl, H. Stibor, P. Sebastian, and A. Scherz. 2014. Separating effects of climatic drivers and biotic feedbacks on seasonal plankton dynamics: no sign of trophic mismatch. Freshwater Biology 59:2204-2220. doi: 10.1111/fwb.12424
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Calbet, A., A. F. Sazhin, J. C. Nejstgaard, S. A. Berger, Z. S. Tait, L. Olmos, D. Sousoni, S. Isari, R. A. Martínez, J. -M. Bouquet, E. M. Thompson, U. Båmstedt, and H. H. Jakobsen. 2014. Future climate scenarios for a coastal productive planktonic food web resulting in microplankton phenology changes and decreased trophic transfer efficiency. PLoS ONE 9(4): e94388. doi: 10.1371/journal.pone.0094388
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Cass, C. J., K. L. Daly, and S. G. Wakeham. Assessment of storage lipid accumulation patterns in eucalanoid copepods from the eastern tropical Pacific Ocean. 2014. Deep-Sea Research Part 1 Oceanographic Research Papers 93:117-130. doi: 10.1016/j.dsr.2014.08.001
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Chen, H., A. Stubbins, E. M. Perdue, N. W. Green, J. R. Helms, K. Mopper, and P. G. Hatcher. 2014. Ultrahigh resolution mass spectrometric differentiation of dissolved organic matter isolated by coupled reverse osmosis-electrodialysis from various major oceanic water masses. Marine Chemistry 164:48-59. doi: 10.1016/j.marchem.2014.06.002
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Close, H. G., S. G. Wakeham, and A. Pearson. 2014. Lipid and 13C signatures of submicron and suspended particulate organic matter in the Eastern Tropical North Pacific: Implications for the contribution of Bacteria. Deep-Sea Research I 85:15-35. doi: 10.1016/j.dsr.2013.11.005
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Dittmar, T., and A. Stubbins. 2014. Dissolved organic matter in aquatic systems. In Treatise on geochemistry, ed. H. D. Holland, and K. K. Turekian, 25-156. Oxford: Elsevier. doi: 10.1016/B978-0-08-095975-7.01010-X
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Fellman, J. B., Hood, E., R. G. M. Spencer, A. Stubbins, and P. A. Raymond. 2014. Watershed glacier coverage influences dissolved organic matter biogeochemistry in coastal watersheds of southeast Alaska. Ecosystems 17(6): 1014-1025. doi: 10.1007/s10021-014-9777-1
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Frischer, M. E., C. A. Sanchez, T. L. Walters, M. E. Thompson, L. M. Frazier, and G.-A. Paffenhöfer. 2014. Reliability of qPCR for quantitative gut content estimation in the circumglobally abundant pelagic tunicate Dolioletta gegenbauri (Tunicata, Thaliacea). Food Webs 1:18-24. doi: 10.1016/j.fooweb.2014.11.001
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Gargett, A. E., D. K. Savidge, and J. R. Wells. 2014. Anatomy of a Langmuir supercell event. Journal of Marine Research 72(3): 127-163. doi: 10.1357/002224014814901976
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Grand, M. M., C. S. Buck, W. M. Landing, C. I. Measures, M. Hatta, W. T. Hiscock, M.Brown, and J. A. Resing. 2014. Quantifying the impact of atmospheric deposition on the biogeochemistry of Fe and Al in the upper ocean: A decade of collaboration with the USCLIVAR-CO2 Repeat Hydrography Program. Oceanography 27(1): 62-65. doi: 10.5670/oceanog.2014.08
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Green, N. W., E. M. Perdue, G. R. Aiken, K. D. Butler, H. Chen, T. Dittmar, J. Niggemann, and A. Stubbins. 2014. An intercomparison of three methods for the large-scale isolation of oceanic dissolved organic matter. Marine Chemistry 161:14-19. doi: 10.1016/j.marchem.2014.01.012
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Hammerstein, H. C., P. A. Work, and M. E. Frischer. 2014. Bacteriophage tracer for fecal contamination sources in coastal waters. Water Quality, Exposure and Health 7(1): 15-26. doi: 10.1007/s12403-013-0104-4
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Helms, J. R., J. Mao, A. Stubbins, K. Schmidt-Roh, R. G. M. Spencer, P. J. Hernes, and K. Mopper. 2014. Loss of optical and molecular indicators of terrigenous dissolved organic matter during long-term photobleaching. Aquatic Sciences 76(3): 353-373. doi: 10.1007/s00027-014-0340-0
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Köster, M., G.-A. Paffenhöfer, R. Schlüter, and A. Meuche. 2014. Time-series observations of prokaryotic colonization of zooplankton fecal pellets. Journal of Plankton Research 36(6): 1461-1475. doi: 10.1093/plankt/fbu060
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Leal, M. C., C. Ferrier-Pagès, R. Calado, J. A. Brandes, M. E. Frischer, and J. C. Nejstgaard. 2014. Trophic ecology of the facultative symbiotic coral Oculina arbusculaMarine Ecology Progress Series 504:171-179. doi: 10.3354/meps10750
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Leal, M. C., C. Ferrier-Pagès, R. Calado, M. E. Thompson, M. E. Frischer, and J. C. Nejstgaard. 2014. Coral feeding on microalgae assessed with molecular trophic markers. Molecular Ecology 23(15): 3870-3876. doi: 10.1111/mec.12486
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Leal, M. C., J. C. Nejstgaard, R. Calado, M. E. Thompson, and M. E. Frischer. 2014. Molecular assessment of heterotrophy and prey digestion in zooxanthellate cnidarians. Molecular Ecology (Special Issue: Molecular Detection of Trophic Interactions) 23:3838-3848. doi: 10.1111/mec.12496
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Leal, M. C., S. A. Berger, C. Ferrier-Pagès, R. Calado, J. Brandes, M. E. Frischer, and J. C. Nejstgaard. 2014. Temporal changes in the trophic ecology of the asymbiotic gorgonian Leptogorgia virgulataMarine Biology 161(9): 2191-2197. doi: 10.1007/s00227-014-2496-5
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Liu, X. –L. C. Zhu, S. G. Wakeham, and K. -U. Hinrichs. 2014. In situ production of branched glycerol dialkyl tetraethers in anoxic marine water columns. Marine Chemistry 166:1-8. doi: 10.1016/j.marchem.2014.08.008
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Longo, A. F., E. D. Ingall, J. M. Diaz, M. Oakes, L. E. King, A. Nenes, N. Mihalopoulos, K. Violaki, A. Avila, C. R. Benitez-Nelson, J. Brandes, I. McNulty, and D. J. Vine. 2014. P-NEXFS analysis of aerosol phosphorus delivered to the Mediterranean Sea, Geophysical Research Letters 41:4043-4049. doi: 10.1002/2014GL060555
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Savidge, D. K., and W. B. Savidge. 2014. Seasonal export of South Atlantic Bight and Mid-Atlantic Bight shelf waters at Cape Hatteras. Continental Shelf Research 74:50-59. doi: 10.1016/j.csr.2013.12.008
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Spencer, R. G. M., A. Vermilyea, J. Fellman, P. Raymond, A. Stubbins, D. Scott, and E. Hood. 2014. Seasonal variability of organic matter composition in an Alaskan glacier outflow: insights into glacier carbon sources. Environmental Research Letters 9(5): 055005. doi: 10.1088/1748-9326/9/5/055005
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Spencer, R. G. M., G. Weidong, P. Raymond, T. Dittmar, E. Hood, J. Fellman, and A. Stubbins. 2014. Source and biolability of ancient dissolved organic matter in glacier and lake ecosystems on the Tibetan Plateau. Geochimica et Cosmochimica Acta 142:64-74. doi: 10.1016/j.gca.2014.08.006
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Stubbins, A., J. -F. Lapierre, M. Berggren, Y. Prairie, T. Dittmar, and P. del Giorgio. 2014. What’s in an EEM? Molecular signatures associated with dissolved organic fluorescence in boreal Canada. Environmental Science and Technology 8(18): 10598-10606. doi: 10.1021/es502086e
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Van Alstyne, K. L., E. L. Harvey, and M. Cataldo. 2014. Effects of dopamine, a compound released by the green-tide macroalga Ulvaria obscura (Chlorophyta), on marine algae and invertebrate larvae and juveniles. Phycologia 53(2): 195-202. doi: 10.2216/13-237.1
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Van Stan, J. T., A. Stubbins, T. Bittar, J. S. Reichard, K. A. Wright, and R. B. Jenkins. 2014. Tillandsia usneoides (L.) L. (Spanish moss) water storage and leachate characteristics from two maritime oak forest settings. Ecohydrology 8(6): 988-1004. doi: 10.1002/eco.1549
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Wakeham, S. G., and A. P. McNichol. 2014. Transfer of organic carbon through marine water columns to sediments – insights from stable and radiocarbon isotopes of lipid biomarkers. Biogeosciences 11(23): 6895-6914. doi: 10.5194/bg-11-6895-2014
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Williams, R. L., R. McKinney, S. Wakeham, and K. F. Wishner. 2014. Trophic ecology and vertical trends of carbon and nitrogen isotopes in oxygen minimum zone zooplankton. Deep-Sea Research I 90:36-47. doi: 10.1016/j.dsr.2014.04.008
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Wolfram, S., J. C. Nejstgaard, and G. Pohnert. 2014. Accumulation of polyunsaturated aldehydes in the gonads of the copepod Acartia tonsa revealed by tailored fluorescent probes. PLOS ONE 9(11): e112522. doi: 10.1371/journal.pone.0112522
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Xie, S., X. -L. Liu, F. Schubotz, S. G. Wakeham, and K. -U. Hinrichs. 2014. Distribution of glycerol ether lipids in the oxygen minimum zone of the Eastern Tropical North Pacific Ocean. Organic Geochemistry 71:60-71. doi: 10.1016/j.orggeochem.2014.04.006
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2013

Buck, C. S., W. M. Landing, and J. Resing. 2013. Pacific Ocean aerosols: Deposition and solubility of iron, aluminum, and other trace elements. Marine Chemistry 157:117-130. doi: 10.1016/j.marchem.2013.09.005
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Carr, S. A., S. W. Vogel, R. B. Dunbar, J. Brandes, C. T. Mills, J. R. Spear, R. Levy, T. R. Naish, R. D. Powell, S. G. Wakeham, and K. W. Mandernack. 2013. Bacterial abundance and composition in marine sediments beneath the Ross Ice Sheet, Antarctica. Geobiology 11:377-395. doi: 10.1111/gbi.12042
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Christensen, B. A., C. R. Alexander, J. A. Goff, R. J. Turner, and J. A. Austin, Jr. 2013. The Last Glacial: Insights from continuous coring on the New Jersey continental shelf. Marine Geology 335:78-99. doi: 10.1016/j.margeo.2012.10.015
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Diaz, J. M., C. M. Hansel, B. M. Voelker, C. M. Mendes, P. F. Andeer, and T. Zhang. 2013. Widespread production of extracellular superoxide by heterotrophic bacteria. Science 340:1223. doi: 10.1126/science.1237331
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Gerecht, A., Y. Carotenuto, A. Ianora, G. Romano, A. Fontana, G. d’Ippolito, H. H. Jakobsen, and J. C. Nejstgaard. 2013. Oxylipin production during a mesocosm bloom of Skeletonema marinoiJournal of Experimental Marine Biology and Ecology 446:159-165. doi: 10.1016/j.jembe.2013.05.014
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Harvey, E. L., H. J. Jeong, and S. Menden-Deuer. 2013. Avoidance and attraction: Chemical cues influence predator-prey interactions of planktonic protists. Limnology & Oceanography 58(4): 1176-1184. doi: 10.4319/lo.2013.58.4.1176
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Helms, J. R., A. Stubbins, E. M. Perdue, N. W. Green, H. Chen, and K. Mopper. 2013. Photochemical bleaching of oceanic dissolved organic matter and its effect on absorption spectral slope and fluorescence. Marine Chemistry 155:81-91. doi: 10.1016/j.marchem.2013.05.015
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Ingall, E. D., J. M. Diaz (co-first author), A. Longo, J. A. Brandes, L. A. Finney, M. Oakes, S. Vogt, B. Lai, and P. L. Yager. 2013. Role of biogenic silica in the removal of iron from the Antarctic seas. Nature Communications 4:1981. doi: 10.1038/ncomms2981
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Jaffé, R., Y. Ding, J. Niggemann, A. V. Vähätalo, A. Stubbins, R. G. M. Spencer, J. Campbell, and T. Dittmar. 2013. Global charcoal mobilization from soils via dissolution and riverine transport to the oceans. Science 340 (6130): 345-347. doi: 10.1126/science.1231476
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Köster, M., and G.-A. Paffenhöfer. 2013. Oxygen consumption of fecal pellets of doliolids (Tunicata, Thaliacea) and planktonic copepods (Crustacea, Copepoda). Journal of Plankton Research 35(2): 323-336. doi: 10.1093/plankt/fbs092
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Leal, M. C., C. R. B. Mendes, V. M. Tavano, M. S. de Souza, V. Brotas, and C. A. E. Garcia. 2013. Shifts in the dominance between diatoms and cryptophytes during three late summers in the Bransfield Strait (Antarctic Peninsula). Polar Biology 36:537-547. doi: 10.1007/s00300-012-1282-4
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Leal, M. C., C. Sheridan, E. Kramarsky-Winter, M. Sweet, and A. Kushmaro. 2013. Diseases in coral aquaculture: causes, implications and preventions. Aquaculture 396-399:124-135. doi: 10.1016/j.aquaculture.2013.02.037
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Leal, M. C., P. N. Pochelon, T. L. da Silva, A. Reis, R. Rosa, and R. Calado. 2013. Variable within-brood maternal provisioning in newly extruded embryos of Homarus gammarusMarine Biology 160:763-772. doi: 10.1007/s00227-012-2131-2.
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Morton, P. L., W. M. Landing, S.-C. Hsu, A. Milne, A. M. Aguilar-Islas, A. R. Baker, A. R. Bowie, C. S. Buck, Y. Gao, S. Gichuki, M. G. Hastings, M. Hatta, A. M. Johansen, R. Losno, C. Mead, M. D. Patey, G. Swarr, A. Vandermark, and L. M. Zamora. 2013. Methods for the sampling and analysis of marine aerosols: results from the 2008 GEOTRACES aerosol intercalibration experiment. Limnology and Oceanography: Methods 11:62-78. doi:10.4319/lom.2013.11.62
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Osburn, C. L., C. A. Stedmon, R. G. M. Spencer, and A. Stubbins. 2013. Emerging Issues Workshop Report: Linking optical and chemical properties of dissolved organic matter in natural waters. Limnology and Oceanography Bulletin 22:78-82. doi: 10.1002/lob.201322369
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Paffenhöfer, G.-A. 2013. A hypothesis on the fate of blooms of doliolids (Tunicata, Thaliacea). Journal of Plankton Research 35(4): 919-924. doi: 10.1093/plankt/fbt048
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Rocha, R. J. M., J. Serôdio, M. C. Leal, P. Cartaxana, and R. Calado. 2013. Effect of light intensity on post-fragmentation photobiological performance of the soft coral Sinularia flexibilisAquaculture 388-391:24-29. doi: 10.1016/j.aquaculture.2013.01.013
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Rontani, J. -F., J. K. Volkman, F. G. Prahl, and S. G. Wakeham. 2013. Biotic and abiotic degradation of alkenones and implications for paleoproxy applications: A review. Organic Geochemistry 59:95-113. doi: 10.1016/j.orggeochem.2013.04.005
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Savidge, D. K., J. A. Austin, and B. O. Blanton. 2013. Variation in the Hatteras Front density and velocity structure Part 1: High resolution transects from three seasons in 2004-2005. Continental Shelf Research 54:93-105. doi: 10.1016/j.csr.2012.11.005
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Savidge, D. K., J. A. Austin, and B. O. Blanton. 2013. Variation in the Hatteras Front density and velocity structure Part 2: Historical setting. Continental Shelf Research 54:106-116. doi: 10.1016/j.csr.2012.11.006
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Shah, S. R., S. B. Joye, J. A. Brandes, and A. P. McNichol. 2013. Carbon isotopic evidence for microbial control of carbon supply to Orca Basin at the seawater–brine interface. Biogeosciences 10:3175-3183. doi: 10.5194/bg-10-3175-2013
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Spencer, R. G. M., A. Stubbins, and J. Gaillardet. 2013. Geochemistry of the Congo River, estuary and plume. In Biogeochemical Dynamics at Major River-Coastal Interfaces: Linkages with Global Change, ed. T. S. Bianchi, M. A. Allison, and W.-J. Cai, 554-583. Cambridge: Cambridge University Press.
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Spencer, R. G .M., G. R. Aiken, M. M. Dornblaser, K. D. Butler, R. M. Holmes, G. Fiske, P. J. Mann, and A. Stubbins. 2013. Chromophoric dissolved organic matter export from U.S. rivers. Geophysical Research Letters 40:1575-1579. doi: 10.1002/grl.50357
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Strom, S. L., E. L. Harvey, K. A. Fredrickson, and S. Menden-Deuer. 2013. Broad salinity tolerance as a refuge from predation in the harmful raphidophyte alga, Heterosigma akashiwo (Raphidophyceae). Journal of Phycology 49:20-31. doi: 10.1111/jpy.12013
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Troedsson, C., J. M. Bouquet, C. Lobon, A. Novac, J. C. Nejstgaard, S. Dupont, S. Bosak, H. H. Jakobsen, N. Romanova, L. Pankoke, A. Isla, J. Dutz, A. F. Sazhin, and E. M. Thompson. 2013. Effects of ocean acidification, temperature and nutrient regimes on the appendicularian Oikopleura dioica: A mesocosm study. Marine Biology 160(8): 2175-2187. doi: 10.1007/s00227-012-2137-9
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Turck, J. A., and C. R. Alexander. 2013. Coastal landscapes and their relationship to human settlement on the Georgia coast. In Life among the tides: Recent archaeology on the Georgia Bight. Anthropological Papers of the American Museum of Natural History, Number 98, ed. V. D. Thompson and D. H. Thomas, 169-190. New York: American Museum of Natural History. doi: 10.5531/sp.anth.0098
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Turich, C., S. Schouten, R. Thunell, R. Varela, Y. Astor, and S. G. Wakeham. 2013. Comparison of TEX86 and temperature proxies in sinking particles in the Cariaco Basin. Deep-Sea Research I 78:115-133. doi: 10.1016/j.dsr.2013.02.008
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2012

Barrett, P. M, J. A. Resing, N. J. Buck, C. S. Buck, W. M. Landing, and C. I. Measures. 2012. The trace element composition of suspended particulate matter in the upper 1000 m of the eastern North Atlantic Ocean: A16N. Marine Chemistry 142-144:41-53. doi: 10.1016/j.marchem.2012.07.006
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Bell, R. J., W. B. Savidge, S. K. Toler, R. H. Byrne, and R. T. Short. 2012. In situ determination of porewater gases by underwater flow-through membrane inlet mass spectrometry. Limnology and Oceanography Methods 10:117-128. doi: 10.4319/10m.2012.10.117
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Buck, C. S., and A. Paytan. 2012. Evaluation of commonly used filter substrates for the measurement of aerosol trace element solubility. Limnology and Oceanography: Methods 10:790-806. doi: 10.4319/lom.2012.10.790
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Calbet, A., R. A. Martínez, S. Isari, S. Zervoudaki, J. C. Nejstgaard, P. Pitta, A. F. Sazhin, D. Sousoni, A. Gomes, S. A. Berger, T. M. Tsagaraki, and R. Ptacnik. 2012. Effects of light availability on mixotrophy and microzooplankton grazing in an oligotrophic plankton food web: Evidences from a mesocosm study in Eastern Mediterranean waters. Journal of Experimental Marine Biology and Ecology 424-425: 66-77. doi: 10.1016/j.jembe.2012.05.005
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Diaz, J. M., E. D. Ingall, S. D. Snow, C. R. Benitez-Nelson, M. Taillefert, and J. A. Brandes. 2012. Potential role of inorganic polyphosphate in the cycling of phosphorus within the hypoxic water column of Effingham Inlet, British Columbia. Global Biogeochemical Cycles 26, GB2040.  doi: 10.1029/2011GB004226
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Dittmar, T., C. de E. Rezende, M. Manecki, J. Niggemann, A. R. C. Ovalle, A. Stubbins, and M. C. Bernardes. 2012. Continuous flux of dissolved black carbon from a vanished tropical forest biome. Nature Geoscience 5: 618-622. doi: 10.1038/NGEO1541.
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Han, Q., C. S. Zender, J. K. Moore, C. S. Buck, Y. Chen, A. Johansen, and C. I. Measures. 2012. Global estimates of mineral dust aerosol iron and aluminum solubility that account for particle size using diffusion-controlled and surface-area-controlled approximations. Global Biogeochemical Cycles 26(2): GB2038. doi: 10.1029/2011GB004186
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Harvey, E. L., and S. Menden-Deuer. 2012. Predator-induced fleeing behaviors in phytoplankton: a new mechanism for harmful algal bloom formation? PLoS ONE 7(9): e46438.
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Jackson, Jr., C. W., C. R. Alexander, and D. W. Bush. 2012. Application of the AMBUR R package for spatio-temporal analysis of shoreline change: Jekyll Island, Georgia, USA. Computers and Geosciences 41: 199-207. doi: 10.1016/j.cageo.2011.08.009
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Koski, M., L. Yebra, J. Dutz, S. H. Jónasdóttir, C. Vidoudez, H. H. Jakobsen, G. Pohnert, and J. C. Nejstgaard. 2012. The effect of egg versus seston quality on hatching success, naupliar metabolism and survival of Calanus finmarchicus in mesocosms dominated by Phaeocystis and diatoms, Marine Biology 159(3): 643-660. doi: 10.1007/s00227-011-1843-z
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Leal, M. C., C. Nunes, S. Engrola, M. T. Dinis, and R. Calado. 2012. Optimization of monoclonal production of the glass anemone Aiptasia pallida (Agassiz in Verrill, 1864).  Aquaculture 354-355:91-96.  doi: 10.1016/j.aquaculture.2012.03.035
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Leal, M., C. Madeira, C. A. Brandão, J. Puga, and R. Calado. 2012. Bioprospecting of marine invertebrates for new natural products — A chemical and zoogeographical perspective. Molecules 2012, 17: 9842-9854. doi: 10.3390/molecules17089842
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Lee, R. F., M. Köstner, and G. -A. Paffenhöfer. 2012. Ingestion and defecation of dispersed oil droplets by pelagic tunicates. Journal of Plankton Research 34(12): 1058-1063. doi: 10.1093/plankt/fbs065
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Pennings, S. C., M. Alber, C. R. Alexander, M. Booth, A. Burd, W. -J. Cai, C. Craft, C. B. DePratter, D. Di Iorio, C. Hopkinson, S. B. Joye, C. D. Meile, W. S. Moore, B. Silliman, V. Thompson, and J. P. Wares. 2012. South Atlantic tidal wetlands. In Wetland Habitats of North America: Ecology and Conservation Concerns, ed. A. Baldwin, and D. Batzer, pp. 45-61, University of California Press.
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Podlaska, A., S. Wakeham, K. Fanning, and G. T. Taylor. 2012. Microbial community structure and productivity in the oxygen minimum zone of the eastern tropical North Pacific. Deep-Sea Research I 66: 77-89. doi: 10.1016/j.dsr.2012.04.002
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Roswati, M. A., U. Bamstedt, J. C. Nejstgaard, and I. di Capua. 2012. Partition of planktonic respiratory carbon requirements during a phytoplankton spring bloom. Marine Ecology Progress Series 451:15-29. doi: 10.3354/meps09564
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Rush, D., E. C. Hopmans, S. G. Wakeham, S. Schouten, and J. S. Sinninghe Damsté.  2012.  Occurrence and distribution of ladderane oxidation products in different oceanic regimes.  Biogeosciences 9:2407-2418. doi: 10.5194/bg-9-2407-2012
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Rush, D., S. G. Wakeham, E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2012. Biomarker evidence for anammox in the oxygen minimum zone of the Eastern Tropical North Pacific. Organic Geochemistry 53:80-87. doi: 10.1016/j.orggeochem.2012.02.005
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Scrudato, R. J., J. R. Chiarenzelli, P. K. Miller, C. R. Alexander, J. Arnason, K. Zamzow, K. Zweifel,  J. Gologergen, J. Kava, V. Waghiyi, and D. O. Carpenter.  2012. Contaminants at Arctic formerly used defense sites.  Journal of Local and Global Health Science 2012:2  doi: 10.5339/jlghs.2012.2
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Sebastian P., H. Stibor, S. Berger, and S. Diehl. 2012. Effects of water temperature and mixed layer depth on zooplankton body size. Marine Biology 159(11): 2431-2440. doi: 10.1007/s00227-012-1931-8
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Spencer, R. G. M., P. J. Hernes, A. K. Aufdenkampe, A. Baker, P. Gulliver, A. Stubbins, G. R. Aiken, R. Y. Dyda, K. D. Butler, V. L. Mwamba, A. M. Mangangu, J. N. Wabakanghanzi, and J. Six. 2012. An initial investigation into the organic matter biogeochemistry of the Congo River. Geochimica et Cosmochimica Acta 84:614-627. doi: 10.1016/j.gca.2012.01.013
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Stubbins, A., E. Hood, P. A. Raymond, G. R. Aiken, R. L. Sleighter, P. J. Hernes, D. Butman, P. G. Hatcher, R. G. Striegl, P. Schuster, H. A. N. Abdulla, A. W. Vermilyea, D. T. Scott, and R. G. M. Spencer. 2012. Anthropogenic aerosols as a source of ancient dissolved organic matter in glaciers. Nature Geoscience 5:198-201. doi: 10.1038/ngeo1403
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Stubbins, A., T. Dittmar, and J. Niggemann. 2012. Photo-lability of deep ocean dissolved black carbon. Biogeosciences 9:1661-1670. doi: 10.5194/bg-9-1661-2012
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Stubbins, A.and T. Dittmar. 2012. Low volume quantification of dissolved organic carbon and dissolved nitrogen. Limnology and Oceanography: Methods  10:347-352. doi: 10.4319/lom.2012.10.347
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Wakeham, S. G., C. Turich, F. Schubotz, A. Podlaska, X. N. Li, R. Varela, Y. Astor, J. Sáenz, D. Rush, J. S. Sinninghe Damsté, R. E. Summons, M. I. Scranton, G. T. Taylor, and K.-U. Hinrichs. 2012. Biomarkers, chemistry and microbiology show chemoautotrophy in a multilayer chemocline in the Cariaco Basin. Deep-Sea Research Part 63:133-156.  doi: 10.1016/j.dsr.2012.01.005
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Winder, M., S. A. Berger, A. Lewandowska, N. Aberle, K. Lengfellner, U. Sommer, and S. Diehl. 2012. Spring phenological responses of marine and freshwater plankton to changing temperature and light conditions. Marine Biology 159(11): 2491-2501. doi: 10.1007/s00227-012-1964-z
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Windom, H. L., L. F. Niencheski, D. Wells, and J. Brandes. 2012. The use of oxygen isotopic ratios to identify natural and anthropogenic mercury concentrations in the Lower Brazilian Pantanal. Environmental Earth Sciences 65(2): 547-553. doi: 10.1007/s12665-011-1369-1
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Wood, W. F., J. A. Brandes, B. D. Foy, C. G. Morgan, T. D. Mann, and D. A. DeShazer. 2012. The maple syrup odour of the “candy cap” mushroom, Lactarius fragilis var. rubidusBiochemical Systematics and Ecology 43: 51-53. doi: 10.1016/j.bse.2012.02.027
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2011

Alexander, C. R., A. D. Uhler, and R. F. Lee. 2011. Using sediment cores to assess inputs of organochlorines and polycyclic aromatic hydrocarbons in coastal Georgia estuaries. In Global Contamination Trends of Persistent Organic Chemicals, ed. B. G. Loganathan, and P. K. -S. Lam, 469-479. Boca Raton: CRC Press.
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Cass, C. J., S. G. Wakeham, and K. L. Daly. 2011. Lipid composition of tropical and subtropical copepod species of the genus Rhincalanus (Copepoda: Eucalanidae): A novel fatty acid and alcohol signature. Marine Ecology Progress Series 439:127-138. doi: 10.3354/meps09324
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Chen, H., A. Stubbins, and P. G. Hatcher. 2011. A mini-electrodialysis system for desalting small volume saline samples for Fourier transform ion cyclotron resonance mass spectrometry. Limnology and Oceanography: Methods 9(12): 582-592. doi: 10.4319/lom.2011.9.582
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Chen, X., S. G. Wakeham, and N. S. Fisher. 2011. Influence of iron on fatty acid and sterol composition of marine phytoplankton and copepod consumers. Limnology and Oceanography 56:716-724. doi: 10.4319/lo.2011.56.2.0716
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Gallon, C., M. A. Ranville, C. H. Conway, W. M. Landing, C. S. Buck, P. L. Morton, and A. R. Flegal. 2011. Asian industrial lead inputs to the North Pacific evidenced by lead concentrations and isotopic compositions in surface waters and aerosols. Environmental Science & Technology 45(23): 9874-9882. doi: 10.1021/es2020428
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Harvey, E. L., and S. Menden-Deuer. 2011. Avoidance, movement, and mortality: the interactions between a protistan grazer and Heterosigma akashiwo, a harmful algal bloom species. Limnology & Oceanography 56(1): 371-378. doi:10.4319/lo.2011.56.1.0371
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Ingall, E. D., J. A. Brandes, J. M. Diaz, M. D. de Jonge, D. Paterson, I. McNulty, W. C. Elliott, and P. Northrup. 2011. Phosphorus K-edge XANES spectroscopy of mineral standards. Journal of Synchrotron Radiation 18:189-197. doi: 10.1107/S0909049510045322
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Jónasdóttir, S. H., J. Dutz, M. Koski, L. Yebra, H. H. Jakobsen, C. Vidoudez, G. Pohnert, and J.C. Nejstgaard. 2011. Extensive cross-disciplinary analysis of biological and chemical control of Calanus finmarchicus reproduction during an aldehyde forming diatom bloom in mesocosms. Marine Biology 158:1943-1963. doi: 10.1007/s00227-011-1705-8
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Köster, M., R. Sietmann, A. Meuche, and G. -A. Paffenhöfer. 2011. The ultrastructure of a doliolid and a copepod fecal pellet. Journal of Plankton Research 33(10): 1538-1549. doi: 10.1093/plankt/fbr053
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Paffenhöfer, G. -A., and M. Köster. 2011. From one to many: on the life cycle of Dolioletta gegenbauri Uljanin (Tunicata, Thaliacea). Journal of Plankton Research 33(7): 1139-1145. doi: 10.1093/plankt/fbr001
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Patonai, K., H. El-Shaffey, and G. -A. Paffenhöfer. 2011. Sinking velocities of fecal pellets of doliolids and calanoid copepods. Journal of Plankton Research 33(7): 1146-1150. doi: 10.1093/plankt/fbr011
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Rontani, J. -F., N. Zabeti, and S. G. Wakeham. 2011. Degradation of particulate organic matter in the Equatorial Pacific Ocean: Biotic or abiotic? Limnology and Oceanography 56:333-349. doi: 10.4319/lo.2011.56.1.0333
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Rontani, J. -F., S. G. Wakeham, F. G. Prahl, F. Vaultier, and J. K. Volkman. 2011. Analysis of trace amounts of alkenones in complex environmental samples by (NaBH4 or NaBD4) reduction and silylation. Organic Geochemistry 42:1299-1307. doi: 10.1016/j.orggeochem.2011.09.004
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Saenz, J., R. Summons, T. I. Eglinton, and S. G. Wakeham. 2011. New constraints on the provenance of hopanoids in the marine geologic record: Bacteriohopanepolyols in marine suboxic and anoxic environments.  Organic Geochemistry 42:1351-1322. doi: 10.1016/j.orggeochem.2011.08.016
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Stubbins, A., C. S. Law, G. Uher, and R. C. Upstill-Goddard. 2011. Carbon monoxide apparent quantum yields and photoproduction in the Tyne estuary. Biogeosciences 8:703-713. doi: 10.5194/bg-8-703-2011
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Vidoudez, C., J. C. Nejstgaard, H. H. Jakobsen, and G. Pohnert. 2011. Dynamics of dissolved and particulate polyunsaturated aldehydes in mesocosms inoculated with different densities of the diatom Skeletonema marinoiMarine Drugs 9(3): 345-358. doi: 10.3390/md9030345
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Xue, J., C. Lee, S. Wakeham, and R. A. Armstrong. 2011. Using principal components analysis (PCA) with cluster analysis to study the organic geochemistry of sinking particles in the ocean. Organic Geochemistry 42:356-367. doi: 10.1016/j.orggeochem.2011.01.012
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2010

Abramson, L., C. Lee, Z. Liu, J. Szlosek, and S. Wakeham. 2010. Exchange between suspended and sinking particles in the northwest Mediterranean as inferred from the organic composition of in situ pump and sediment trap samples. Limnology and Oceanography 55(2): 725-739. doi: 10.4319/lo.2010.55.2.0725
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Alexander, C. R., J. P. Walsh, and A. R. Orpin. 2010. Modern sediment dispersal and accumulation on the outer Poverty continental margin. Marine Geology 270:213-226. doi: 10.1016/j.margeo.2009.10.015
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Barofsky, A., P. Simonelli, C. Vidoudez, C. Troedsson, J. C. Nejstgaard, H. H. Jakobsen, and G. Pohnert. 2010. Growth phase of the diatom Skeletonema marinoi influences the metabolic profile of the cells and the selective feeding of the copepod Calanus spp. Journal of Plankton Research 32(3): 263-272. doi: 10.1093/plankt/fbp121
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Blanton, J. O., A. J. Garrett, J. S. Bollinger, D. W. Hayes, L. D Koffman, J. Amft, and T. Moore. 2010. Transport and retention of a conservative tracer in an isolated creek—marsh system. Estuarine, Coastal and Shelf Science 87(22): 333-345. doi: 10.1016/j.ecss.2010.01.010
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Bradley, P. B., D. A. Bronk, M. P. Sanderson, J. C. Nejstgaard, M. E. Frischer, A. F. Sazhin, L. M. Killberg-Thoreson, P. G. Verity, and L. Campbell. 2010. Nitrogen uptake by phytoplankton and bacteria during an induced Phaeocystis pouchetii bloom, measured using size fractionation and flow cytometric sorting. Aquatic Microbial Ecology 61(1): 89-104. doi: 10.3354/ame01414
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Brandes, J. A., S. Wirick, and C. Jacobsen. 2010. Carbon K-edge spectra of carbonate minerals. Journal of Synchrotron Radiation 17(5): 676-682. doi: 10.1107/S0909049510020029
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Buck, C. S., W. M. Landing, and J. A. Resing. 2010. Particle size and aerosol iron solubility: A high-resolution analysis of Atlantic aerosols. Marine Chemistry 120:14-24. doi: 10.1016/j.marchem.2008.11002
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Buck, C. S., W. M. Landing, J. A. Resing, and C. I. Measures. 2010. The solubility and deposition of aerosol Fe and other trace elements in the North Atlantic Ocean: Observations from the A16N CLIVAR/CO2 repeat hydrography section. Marine Chemistry 120(1-4): 57-70. doi: 10.1016/j.marchem.2008.08.003
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Dale, V. H., C. L. Kling, J. L. Meyer, J. Sanders, H. Stallworth, T. Armitage, D. Wangsness, T. Bianchi, A. Blumberg, W. Boynton, D. J. Conley, W. Crumpton, M. David, D. Gilbert, R. W. Howarth, R. Lowrance, K. Mankin, J. Opaluch, H. Paerl, K. Reckhow, A. N. Sharpley, T. W. Simpson, C. S. Snyder, and D. Wright. 2010. Hypoxia in the northern Gulf of Mexico. Springer Series on Environmental Management. New York: Springer-Verlag. doi: 10.1007/978-0-387-89686-1
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de Jonge, M. D., C. Holzner, S. B. Baines, B. S. Twining, K. Ignatyev, J. Diaz, D. L. Howard, D. Legnini, A. Micelli, I. McNulty, C. J. Jacobsen, and S. Vogt. 2010. Quantitative 3D elemental microtomography of Cyclotella meneghiniana at 400–nm resolution. Proceedings of the National Academy of Sciences of the United States of America 107(36): 15676-15680. doi: 10.1073/pnas.1001469107
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de Jonge, M. D., D. Paterson, I. McNulty, C. Rau, J. A. Brandes, and E. D. Ingall. 2010. An energy and intensity monitor for x-ray absorption near-edge structure measurements. Nuclear Instruments and Methods in Physics Research Section A:  Accelerators, Spectrometers, Detectors, and Associated Equipment 619(1-3): 154-156.
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Diaz, J. M., and E. D. Ingall. 2010. Fluorometric quantification of natural inorganic polyphosphate.  Environmental Science and Technology 44(12): 4665-4671.
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Durbin, E. G., A. Bucklin, J. C. Nejstgaard, and M. E. Frischer. 2010. Molecular techniques to establish trophic links. In Marine Ecosystems and Global Change, ed. M. Barange, J. G. Field, R. P. Harris, E. E. Hofmann, R. I. Perry, and F. Werner, 131-133. Oxford, UK: Oxford University Press.
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Jahnke, R. A., and J. O. Blanton. 2010. The Gulf Stream. In Carbon and nutrient fluxes in continental margins: A global synthesis, eds. K. K. Liu, L. Atkinson, R. Quinones, and L. Talaue-McManus, 146-169. Global Change: The IGBP Series. Berlin Heidelberg: Springer-Verlag.
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Köster, M., G.-A. Paffenhöfer, C. V. Baker, and J. E. Williams. 2010. Oxygen consumption of doliolids (Tunicata, Thaliacea). Journal of Plankton Research. 32(2): 171-180. doi: 10.1093/plankt/fbp112
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Ranville, M. A., G. A. Cutter, C. S. Buck, W. M. Landing, L. S. Cutter, J. A. Resing, and A. R. Flegal. 2010. Aeolian contamination of Se and Ag in the North Pacific from Asian fossil fuel combustion. Environmental Science & Technology 44(5): 1587-1593. doi: 10.1021/es902523m
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Rattray, J. E., J. van de Vossenberg, A. Jaeschke, E. C. Hopmans, S. G. Wakeham, G. Lavik, M. M. M. Kuypers, M. Strous, M. S. M. Jetten, S. Schouten, and J. S. Sinninghe Damsté. 2010. Impact of temperature on ladderane lipid distribution in anammox bacteria. Applied and Environmental Microbiology 76(5): 1596-1603. doi: 10.1128/AEM.01796-09
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Riebesell, U., K. Lee, and J. C. Nejstgaard. 2010. Pelagic mesocosms. In: Guide to best practices for ocean acidification research and data reporting, eds. U. Riebesell, V. Fabry, L. Hansson, and J.-P. Gattuso, 260. Luxembourg: Publications Office of the European Union.
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Robinson, M. H., C. R. Alexander, C. W. Jackson, C. P. McCabe, and D. Crass. 2010. Threatened archaeological, historic, and cultural resources of the Georgia coast: identification, prioritization and management using GIS technology. Geoarchaeology: An International Journal 25(3): 312-326. doi: 10.1002/gea.20309
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Savidge, D. K., J. Norman, C. Smith, J. A. Amft, T. Moore, C. Edwards, and G. Voulgaris. 2010. Shelf edge tide correlated eddies along the southeastern United States. Geophysical Research Letters 37(22): L22604, doi: 10.1029/2010GL045236
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Spencer, R. G. M., P. J. Hernes, R. Ruf, A. Baker, R. Y. Dyda, A. Stubbins, and J. Six. 2010. Temporal controls on dissolved organic matter and lignin biogeochemistry in a pristine tropical river, Democratic Republic of Congo. Journal of Geophysical Research 115(G3): G03013. doi: 10.1029/2009JG001180
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Stubbins, A., R. G. M. Spencer, H. Chen, P. G. Hatcher, K. Mopper, P. J. Hernes, V. L. Mwamba, A. M. Mangangu, J. N. Wabakanghanzi, and J. Six. 2010. Illuminated darkness: molecular signatures of Congo River dissolved organic matter and its photochemical alteration as revealed by ultrahigh precision mass spectrometry. Limnology and Oceanography 55(4): 1467-1477. doi: 10.4319/lo.2010.55.3.1467
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Wakeham, S. G., C. Turich, G. T. Taylor, A. Podlaska, M. I. Scranton, X. N. Li, R. Varela, and Y. Astor. 2010. Mid-chain methoxylated fatty acids within the chemocline of the Cariaco Basin:  A chemoautotrophic source? Organic Geochemistry 41(5): 498-512. doi: 10.1016/j.orggeochem.2010.01.005
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Zonneveld, K. A. F., G. J. M. Versteegh, S. Kasten, T. I. Eglinton, K.-C. Emeis, C. Huguet, B. P. Koch, G. J. de Lange, J. W. de Leeuw, J. J. Middelburg, G. Mollenhauer, F. G. Prahl, J. Rethemeyer, and S. G. Wakeham. 2010. Selective preservation of organic matter in marine environments; processes and impact on the sedimentary record. Biogeosciences 7:483-511. doi: 10.5194/bg-7-483-2010
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2009

Abramson, L., S. Wirick, C. Lee, C. Jacobsen, and J. A. Brandes. 2009. The use of soft x-ray spectromicroscopy to investigate the distribution and composition of organic matter in a diatom frustule and a biomimetic analog. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1369-1380. doi: 10.1016/j.dsr2.2008.11.031
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Alexander, C., and H. Lee. 2009. Sediment accumulation on the Southern California Bight continental margin during the twentieth century. In Special Paper 454, Earth Science in the Urban Ocean: The Southern California Continental Borderland, ed. H. J. Lee, and W. R. Normark, 69-88. Boulder Colorado: Geological Society of America, Inc.
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Armstrong, R. A., C. Lee, M. L. Peterson, J. K. Cochran, and S. G. Wakeham. 2009. Settling velocity spectra and the ballast ratio hypothesis. Deep Sea Research Part II: Topical Studies in Oceanography 56(18): 1470-1478. doi: 10.1016/j.dsr2.2008.11.032
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Blanton, J. O., A. J. Garrett, J. S. Bollinger, D. W. Hayes, L. D. Koffman, and J. Amft. 2009. Transport and dispersion of a conservative tracer in coastal waters with large intertidal areas. Estuaries and Coasts 32(3): 573-592. doi: 10.1007/s12237-009-9141-4
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Brandes, J. A. 2009. Rapid and precise δ13C measurement of dissolved inorganic carbon in natural waters using liquid chromatography coupled to an isotope-ratio mass spectrometer. Limnology and Oceanography: Methods 7(11): 730-739. doi: 10.4319/lom.2009.7.730
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Brandes, J. A., R. M. Hazen, and H. S. Yoder, Jr. 2009. Inorganic nitrogen reduction and stability under simulated hydrothermal conditions. Astrobiology 8(6): 1113-1126.  doi: 10.1089/ast.2007.0187
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Canuel, E. A., E. J. Lerberg, R. M. Dickhut, S. S. Kuehl, T. S. Bianchi, and S. G. Wakeham. 2009. Changes in sediment and organic carbon accumulation in a highly-disturbed ecosystem:  The Sacramento-San Joaquin River Delta, (California, U.S.A.).  Marine Pollution Bulletin 59(4-7): 154-163. doi: 10.1016/j.marpolbul.2009.03.025
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Cody, G. D., J. Brandes, C. Jacobsen, and S. Wirick. 2009. Soft X-ray induced chemical modification of polysaccharides in vascular plant cell walls. Journal of Electron Spectroscopy and Related Phenomena 170(1-3): 57-64. doi: 10.1016/j.elspec.2008.09.007
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Deibel, D., and G.-A. Paffenhöfer. 2009. Predictability of patches of neritic salps and doliolids (Tunicata, Thaliacea). Journal of Plankton Research 31(12): 1571-1579. doi: 10.1093/plankt/fbp091
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Diaz, J., E. Ingall, S. Vogt, M. D. de Jonge, D. Paterson, C. Rau, and J. A. Brandes. 2009. Characterization of phosphorus, calcium, iron, and other elements in organisms at sub-micron resolution using X-ray fluorescence spectromicroscopy. Limnology and Oceanography: Methods 7(1): 42-51. doi:10.4319/lom.2009.7.42
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Helms, J. R., A. Stubbins, J. D. Ritchie, E. C. Minor, D. J. Kieber, and K. Mopper.  2009.  Erratum:  Absorption spectral slopes and slope ratios as indicators of molecular weight, source, and photobleaching of chromophoric dissolved organic matter.   Limnology and Oceanography 54(3): 1023.  doi:  10.4319/lo.2009.54.3.1023.
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Lee, C., M. L. Peterson, S. G. Wakeham, R. A. Armstrong, J. K. Cochran, J. C. Miquel, S. W. Fowler, D. Hirschberg, A. Beck, and J. Xue. 2009. Particulate organic matter and ballast fluxes measured using time-series and settling velocity sediment traps in the northwestern Mediterranean Sea. Deep-Sea Research Part IITopical Studies in Oceanography 56(18): 1420-1436. doi: 10.1016/j.dsr2.2008.11.029
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Lee, C., R. A. Armstrong, J. K. Cochran, A. Engel, S. W. Fowler, M. Goutx, P. Masqué, J. C. Miquel, M. Peterson, C. Tamburini, and S. Wakeham. 2009. MedFlux: Investigations of particle flux in the Twilight Zone. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1363-1368. doi: 10.1016/j.dsr2.2008.12.003
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Lehmann, J., J. Brandes, H. Fleckenstein, C. Jacobson, D. Solomon, and J. Thieme. 2009. Synchrotron-based near-edge X-ray spectroscopy of natural organic matter in soils and sediments. In Biophysico-Chemical Processes Involving Natural Nonliving Organic Matter in Environmental Systems, ed. P. M. Huang, and N. Senesi. Hoboken: Wiley.
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Liu, Z., J. K. Cochran, C. Lee, B. Gasser, J. C. Miquel, and S. G. Wakeham. 2009. Further investigations on why POC concentrations differ in samples collected by Niskin bottle and in situ pump. Deep-Sea Research Part II:  Topical Studies in Oceanography 56(18): 1558-1567. doi: 10.1016/j.dsr2.2008.12.019
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Liu, Z., J. Mao, M. L. Peterson, C. Lee, S. G. Wakeham, and P. G. Hatcher. 2009. Characterization of sinking particles from the northwest Mediterranean Sea using advanced solid-state NMR.  Geochimica et Cosmochimica Acta 73(4): 1014-1026. doi: 10.1016/j.gca.2008.11.019
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Muri, G., and S. G. Wakeham. 2009. Effect of depositional regimes on polycyclic aromatic hydrocarbons in Lake Bled (NW Slovenia) sediments. Chemosphere 77(1): 74-79. doi: 10.1016/j.chemosphere.2009.05.023
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Muri, G., and S. G. Wakeham. 2009. Source assessment and sedimentary record of pyrolytic polycyclic aromatic hydrocarbons in Lake Bled (NW Slovenia). Acta Chimica Slovenica 56(2): 315-321.
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Peterson, M. L., J. Fabres, S. G. Wakeham, C. Lee, I. J. Alonso and J. C. Miquel. 2009. Sampling the vertical particle flux in the upper water column using a large diameter free-drifting NetTrap adapted to an indented rotating sphere sediment trap. Deep-Sea Research II:  Topical Studies in Oceanography 56(18): 1547-1557. doi: 10.1016/j.dsr2.2008.12.020
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Rontani, J. -F., N. Zabeti, and S. G. Wakeham. 2009. The fate of marine lipids: Biotic vs. abiotic degradation of particulate sterols and alkenones in the Northwestern Mediterranean Sea.  Marine Chemistry 113(1-2): 9-18. doi: 10.1016/j.marchem.2008.11.001
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Ryan, H. F., H. J. Lee, P. J. Haeussler, C. R. Alexander, and R. E. Kayen. 2009. Historic and paleo-submarine landslide deposits imaged beneath Port Valdez, Alaska: implications for tsunami generation in a glacial fiord. In Submarine Mass Movements and Their Consequences, Vol 28, eds. D. C. Mosher, C. Shipp, L. Moscardelli, J. Chaytor, C. Baxter, H. Lee, R. Urgeles (eds.),  1-8. Advances in Natural and Technological Hazards Research.  Springer
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Savidge, D. K., and J. A. Amft. 2009. Circulation on the West Antarctic Peninsula derived from 6 years of shipboard ADCP transects, Deep-Sea Research Part I: Oceanographic Research Papers 56(10): 1633-1655.
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Savidge, W. B., and J. A. Brandes. 2009. Addressing challenges for chemical oceanography: Unknown knowns and known unknowns: Chemical oceanography in a changing world; Savannah, Georgia, 22–24 February 2009. EOS Transactions 90(20): 176.  doi: 10.1029/2009EO200004
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Schubotz, F., S. G. Wakeham, J. S Lipp, H. F. Fredericks, and K.-U. Hinrichs. 2009. Detection of microbial biomass by intact polar membrane lipid analysis in the water column and surface sediments of the Black Sea. Environmental Microbiology 11(10): 2720-2734. doi: 10.1111/j.1462-2920.2009.01999.x
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Simonelli, P., C. Troedsson, J. C. Nejstgaard, K. Zech, J. B. Larsen, and M. E. Frischer. 2009. Evaluation of DNA extraction and handling procedures for PCR-based copepod feeding studies.  Journal of Plankton Research 31(12): 1465-1474.  doi: 10.1093/plankt/fbp087
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Spencer, R. G. M., A. Stubbins, P. J. Hernes, A. Baker, K. Mopper, A. K. Aufdenkampe, R. Y. Dyda, V. L. Mwamba, A. M. Mangangu, J. N. Wabakanghanzi, and J. Six. 2009. Photochemical degradation of dissolved organic matter and dissolved lignin phenols from the Congo River.  Journal of Geophysical Research Biogeosciences 114, G03010, doi:10.1029/2009JG000968
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Tamburini, C., M. Goutx, C. Guigue, M. Garel, D. Lefèvre, B. Charrière, R. Sempéré, S. Pepa, M. L. Peterson, S. Wakeham, and C. Lee. 2009. Effects of hydrostatic pressure on microbial alteration of sinking fecal pellets. Deep-Sea Research II: Topical Studies in Oceanography 56(18): 1533-1546. doi: 10.1016/j.dsr2.2008.12.035.
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Troedsson, C., J. -M. Bouquet, R. Skinnes, J. -L. Acuña, K. Zech, M. E. Frischer, and E. M. Thompson. 2009. Regulation of filter-feeding house components in response to varying food regimes in the appendicularian, Oikopleura dioica. Journal of Plankton Research 31(12): 1453-1463.   doi: 10.1093/plankt/fbp085
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Troedsson, C., P. Simonelli, V. Nägele, J. C. Nejstgaard, and M. E. Frischer. 2009. Quantification of copepod gut content by differential length amplification quantitative PCR (dla-qPCR). Marine Biology 156(3): 253-259.  doi: 10.1007/s00227-008-1079-8
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Veilleux, M.-H., A. F. Dickens, J. Brandes, and Y. Gèlinas. 2009. Density separation of combustion-derived soot and petrogenic graphitic black carbon: quantification and isotopic characterization. From Deep-sea to Coastal Zones: Methods and Techniques for Studying Paleoenvironments, IOP Conference Series: Earth and Environmental Science 5(1) (2009) 012010 (Proceeding – peer reviewed)  doi: 10.1088/1755-1307/5/1/012010
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Wakeham, S. G., C. Lee, M. L. Peterson, Z. Liu, J. Szlosek, I. F. Putnam, and J. Xue. 2009. Organic biomarkers in the twilight zone—Time series and settling velocity sediment traps during MedFlux. Deep-Sea Research Part II: Topical Studies in Oceanography 56(18): 1437-1453. doi: 10.1016/j.dsr2.2008.11.030
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Wakeham, S. G., E. A. Canuel, E. J. Lerberg, P. Mason, T. Sampere, and T. Bianchi. 2009. Partitioning of organic matter in continental margin sediments among density fractions. Marine Chemistry 115(3-4): 211-225. doi:10.1016/j.marchem.2009.08.005
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Walker, A. N., R. F. Lee, and M. E. Frischer. 2009. Transmission of the parasitic dinoflagellate Hematodinium sp. infection in blue crabs Callinectes sapidus by cannibalism. Diseases of Aquatic Organisms 85(3): 193-197.  doi: 10.3354/dao02072
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Wimbush, J., M. E. Frischer, J. W. Zarzynski, and S. A. Nierzwicki-Bauer. 2009. Eradication of colonizing populations of zebra mussels ( Dreissena polymorpha ) by early detection and SCUBA removal:  Lake George, NY.  Aquatic Conservation-Marine and Freshwater Ecosystems  19(6): 703-713.  doi: 10.1002/aqc.1052
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Windom, H. L., A. Piola, and B. McKee.  2009. Carbon and nutrient cycling in the southwestern Atlantic Ocean:  State of knowledge on the southwestern Atlantic Ocean margin; Montevideo, Uruguay, 16-22 November 2008. EOS Transactions 90(11): 93.  doi: 10.1029/2009EO110014
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2008

Alexander, C. R., ed. 2008. Coastal and Marine Geology of the Southeastern United States. Special issue, Southeastern Geology 45(3), Preface, p. i.
Not available online

Antia, A. N., K. Suffrian, L. Holste, M. N. Müller, J. C. Nejstgaard, P. Simonelli, Y. Carotenuto, and S. Putzeys. 2008. Dissolution of coccolithophorid calcite by microzooplankton and copepod grazing. (Revised manuscript was not submitted)  doi: 10.5194/bgd-5-1-2008
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Brandes, J. A., G. D. Cody, D. Rumble, P. Haberstroh, S. Wirick, and Y. Gelinas. 2008. Carbon K-edge XANES spectromicroscopy of natural graphite. Carbon 46(11):  1424-1434. doi: 10.1016/j.carbon.2008.06.020
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Dale, V. H., G. R. Biddinger, M. C. Newman, J. T. Oris, G. W. Suter, T. Thompson, T. M. Armitage, J. L. Meyer, R. M. Allen-King, G. A. Burton, P. M. Chapman, L. L. Conquest, I. J. Fernandez, W. G. Landis, L. L. Master, W. J. Mitsch, T. C. Mueller, C. F. Rabeni, A. D. Rodewald, J. G. Sanders, and I. L. Heerden. 2008. Enhancing the ecological risk assessment process.  Integrated Environmental Assessment and Management 4(3): 306-313.  doi: 10.1897/IEAM_2007-066.1
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Diaz, J., E. Ingall, C. Benitez-Nelson, D. Paterson, M. D. de Jonge, I. McNulty, and J. A. Brandes. 2008. Marine polyphosphate:  A key player in geologic phosphorus sequestration. Science 320(5876): 652-655. doi:  10.1126/science.1151751
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Edwards, C.  R., and H. E. Seim. 2008. Complex EOF analysis as a method to separate barotropic and baroclinic velocity structure in shallow water.  Journal of Atmospheric and Oceanic Technology 25(5):  808-821.  doi: 10.1175/2007JTECHO562.1
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George, S. B., C. Fox, and S. G. Wakeham. 2008. Fatty acid composition of larvae of the sand dollar Dendraster excentricus (Echinodermata) might reflect FA composition of the diets.  Aquaculture  285(1-4):  167-173. doi: 10.1016/j.aquaculture.2008.08.0.10
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Helms, J. R., A. Stubbins, J. D. Ritchie, E. C. Minor, D. J. Kieber, and K. Mopper. 2008. Absorption spectral slopes and slope ratios as indicators of molecular weight, source, and photobleaching of chromophoric dissolved organic matter. Limnology & Oceanography 53(3): 955-969.  doi: 10.4319/lo.2008.53.3.0955
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Hitchcock, G. L., W. S. Arnold, M. Frischer, C. Kelble, and R. W. Cowen. 2008. Short-term dispersal of an intentionally-released patch of larval Mercenaria in the Indian River Lagoon, Florida, USA.  Bulletin of Marine Science 82(1): 41-57.
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Huang, H., C. Chen, J. O. Blanton, and F. A. Andrade. 2008. A numerical study of tidal asymmetry in Okatee Creek, South Carolina. Estuarine, Coastal and Shelf Science 78(1): 190-202.  doi: 10.1016/j.ecss.2007.11.027
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Jahnke, D. B., and R. A. Jahnke. 2008. Dynamics of seafloor processes: Advances from benthic observing technologies. Oceanography  21(4): 162-163.  doi: 10.5670/oceanog.2008.12
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Jahnke, R. A. 2008. Maybe it’s not just about air-water gas exchange. 2008. Oceanography 21(4): 42-43.    [Note:   Jahnke’s article is a sidebar item embedded within Edson et al.,  Investigations of Air-Sea Gas Exchange in the CoOP Coastal Air-Sea Chemical Exchange Project, pp. 34-45, in the same journal volume] doi:  10.5670/oceanog.2008.03
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Jahnke, R. A., J. R. Nelson, M. E. Richards, C. Y. Robertson, A. M. F. Rao, and D. B. Jahnke. 2008. Benthic primary productivity on the Georgia midcontinental shelf: Benthic flux measurements and high-resolution, continuous in situ PAR records. Journal of Geophysical Research 113(C8): C08022. doi: 10.1029/2008JC004745
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Jahnke, R. A., M. R. Roman, and K. H. Brink. 2008. Coastal ocean processes program:  Advancing interdisciplinary research and technology development. Oceanography 21(4): 18-21.  doi: 10.5670/oceanog.2008.01
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Jiang, H., and G. -A. Paffenhöfer. 2008. Hydrodynamic signal perception by the copepod Oithona plumifera. Marine Ecology Progress Series 373: 37-52.  doi: 10.3354/meps07749
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Köster, M., C. Krause, and G. -A. Paffenhöfer. 2008. Time-series measurements of oxygen consumption of copepod nauplii. Marine Ecology Progress Series 353:157-164.  doi: 10.3354/meps07185
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Lee, R. F., W. Hagen, and G. Kattner. 2008. Lipid storage in marine zooplankton. Marine Ecology Progress Series 307:273-306.  doi: 10.3354/meps307273
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Measures, C. I., W. M. Landing, M. T. Brown, and C. S. Buck. 2008. A commercially available rosette system for trace metal—clean sampling. Limnology and Oceanography: Methods 6(9): 384-394.  doi: 10.4319/lom.2008.6.384
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Measures, C. I., W. M. Landing, M. T. Brown, and C. S. Buck. 2008. High resolution Al and Fe data from the Atlantic Ocean CLIVAR-CO2 Repeat Hydrography A16N transect: Extensive linkages between atmospheric dust and upper ocean geochemistry. Global Biogeochemical Cycles 22(1), GB1005. doi: 10.1029/2007GB003042
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Nejstgaard, J. C., M. E. Frischer, P. Simonelli, C. Troedsson, M. Brakel, F. Adiyaman, A. F. Sazhin, and L. F. Artigas. 2008. Quantitative PCR to estimate copepod feeding. Marine Biology 153(4): 565-577.  doi:  10.1007/s00227-007-0830-x
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Percent, S. F., M. E. Frischer, P. A. Vescio, E. B. Duffy, V. Milano, M. McLellan, B. M. Stevens, C. W. Boylen, and S. A. Nierzwicki-Bauer. 2008. Bacterial community structure of acid-impacted lakes: What controls diversity? Applied and Environmental Microbiology 74(6): 1856-1868.  doi: 10.1128/AEM.01719-07
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Rontani, J.-F., and S. G. Wakeham. 2008. Alteration of alkenone unsaturation ratio with depth in the Black Sea: Potential roles of stereomutation and aerobic biodegradation. Organic Geochemistry 39(9):  1259-1268.  doi: 10.1016/j.orggeochem.2008.06.002
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Sajdel-Sulkowska, E. M., B. Lipinski, H. Windom, T. Audhya, and W. McGinnis. 2008. Oxidative stress in autism:  Elevated cerebellar 3-nitrotyrosine levels. American Journal of Biochemistry and Biotechnology 4(2): 73-84.  doi: 10.3844/ajbbsp.2008.73.84
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Sampere, T. P., T. S. Bianchi, S. G. Wakeham, and M. A. Allison. 2008. Sources of organic matter in surface sediments of the Louisiana Continental margin: Effects of major depositional/transport pathways and Hurricane Ivan. Continental Shelf Research 28(17): 2472-2487. doi:  10.1016/j.csr.2008.06.009
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Sanderson, M. P., D. A. Bronk, J. C. Nejstgaard, P. G. Verity, A. F. Sazhin, and M. E. Frischer. 2008. Phytoplankton and bacterial uptake of inorganic and organic nitrogen during an induced bloom of Phaeocystis pouchetii. Aquatic Microbial Ecology 51(2): 153-168. doi: 10.3354/ame01178
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Savidge, W. B., A. Gargett, R. A. Jahnke, J. R. Nelson, D. K. Savidge, R. T. Short, and G. Voulgaris. 2008. Forcing and dynamics of seafloor-water column exchange on a broad continental shelf. Oceanography 21(4): 179-184.  doi: 10.5670/oceanog.2008.16
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Schulz, K. G., U. Riebesell, R. G. J. Bellerby, H. Biswas, M. Meyerhöfer, M. N. Müller, J. K. Egge, J. C. Nejstgaard, C. Neill, J. Wohlers, and E. Zöllner. 2008. Build-up and decline of organic matter during PeECE III. Biogeosciences 5(3): 707-718.   doi: 10.5194/bg-5-707-2008
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Shay, L. K., H. Seim, D. Savidge, R. Styles, and R. H. Weisberg. 2008. High frequency radar observing systems in SEACOOS: 2002-2007 lessons learned. Marine Technical Society Journal  42(3): 55-67.
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Stubbins, A., V. Hubbard, G. Uher, C. S. Law, R. C. Upstill-Goddard, G. Aiken, and K. Mopper. 2008. Relating carbon monoxide photoproduction to dissolved organic matter functionality. Environmental Science & Technology 42(9): 3271-3276.  doi: 10.1021/es703014q
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Suffrian, K., P. Simonelli, J. C. Nejstgaard, S. Putzeys, Y. Carotenuto, and A. N. Antia. 2008. Microzooplankton grazing and phytoplankton growth in marine mesocosms with increased CO2 levels. Biogeosciences 5(4): 1145-1156. doi: 10.5194/bg-5-1145-2008
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Thingstad, T. F., R. G. J. Bellerby, G. Bratbak, K. Y. Børsheim, J. K. Egge, M. Heldal, A. Larsen, C. Neill, J. Nejstgaard, S. Norland, R. A. Sandaa, E. F. Skjoldal, T. Tanaka, R. Thyrhaug, and B. Töpper. 2008. Counterintuitive carbon-to-nutrient coupling in an Arctic pelagic ecosystem.  Nature  455: 387-390. doi: 10.1038/nature07235
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Townsend-Small, A., M. E. McClain, B. Hall, C. Llerena, J. L. Noruera, and J. A. Brandes. 2008. Suspended sediments and organic matter in mountain headwaters of the Amazon River:  Results from a 1-year time series study in the central Peruvian Andes. Geochimica et Cosmochimica Acta 72(3): 732-740. doi: 10.1016/j.gca.2007.11.020.
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Troedsson, C., R. F. Lee, T. Walters, V. Stokes, K. Brinkley, V. Naegele, and M. E. Frischer. 2008. Detection and discovery of crustacean parasites in blue crabs (Callinectes sapidus) by using 18S rRNA gene-targeted denaturing high-performance liquid chromatography. Applied and Environmental Microbiology 74(14): 4346-4353.  doi: 10.1128/AEM.02132-07
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Turich, C. 2008. Erratum to Courtney Turich, Katherine H. Freeman, Mary Ann Bruns, Maureen Conte, A. Daniel Jones and Stuart G. Wakeham (2007) “Lipids of marine Archaea: Patterns and provenance in the water-column and sediments”  Geochimica et Cosmochimica Acta 71 3272-3291.  Geochimica et Cosmochimica Acta 72(13): 3287-3288. doi: 10.1016/j.gca.2008.01.035
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Turich, C., K. H. Freeman, A. D. Jones, M. A. Bruns, M. Conte, and S. G. Wakeham. 2008. Reply to the comment by S. Schouten, M. van der Meer, E. Hopmans, and J. S. Sinninghe Damsté on “Lipids of marine Archaea: patterns and provenance in the water column”. Geochimica et Cosmochimica Acta 72(21): 5347-5349.  doi: 10.1016/j.gca.2008.04.042
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Uttieri, M., G.-A. Paffenhöfer, and M. G. Mazzocchi. 2008. Prey capture in Clausocalanus furcatus (Copepoda: Calanoida). The role of swimming behaviour. Marine Biology 153(5): 925-935.  doi: 10.1007/s00227-007-0864-0
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Wiggert, J. D., E. E. Hofmann, and G. -A. Paffenhöfer. 2008. A modelling study of developmental stage and environmental variability effects on copepod foraging. ICES Journal of Marine Science 65(3): 379-398. doi: 10.1093/icesjms/fsm193.
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Yoshinaga, M. Y., P. Y. G. Sumida, and S. G. Wakeham. 2008. Lipid biomarkers in surface sediments of an unusual coastal upwelling area from the SW Atlantic Ocean. Organic Geochemistry 39(10): 1385-1399.  doi: 10.1016/j.orggeochem.2008.07.006
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2007

Brandes, J. A., A. H. Devol, and C. Deutsch. 2007. New developments in the marine nitrogen cycle. Chemical Reviews 107(2): 577-589.   doi: 10.1021/cr050377t
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Brandes, J. A., E. Ingall, and D. Paterson. 2007. Characterization of minerals and organic phosphorus species in marine sediments using soft X-ray fluorescence spectromicroscopy. Marine Chemistry 103(3-4): 250-265.  doi: 10.1016/j.marchem.2006.09.004
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Brouwer, M., and R. F. Lee. 2007. Response to toxic chemicals at the molecular, cellular, tissue, and organismal level.  In The Blue Crab Callinectes sapidus, eds. V. S. Kennedy and L. E. Cronin, 485-512.  College Park, Maryland:  Maryland Sea Grant College, University of Maryland.
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Carotenuto, Y., S. Putzeys, P. Simonelli, A. Paulino, M. Meyerhöfer, K. Suffrian, A. Antia, J.C. Nejstgaard. 2007. Copepod feeding and reproduction in relation to phytoplankton development during the PeECE III mesocosm experiment. Biogeosciences Discussions 4(5): 3913-3936.  doi:  10.5194/bgd-4-3913-2007
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Coolen, M. J. L., B. Abbas, J. van Bleijswijk, E. C. Hopmans, M. M. Kuypers, S. G. Wakeham and J. S. Sinninghe Damsté. 2007. Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environmental Microbiology 9(4): 1001-1016.  doi: 10.1111/j.1462-2920.2006.01227.x
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Gilligan, M. R., P.  G. Verity, C. B. Cook, S. B. Cook, M. G. Booth, and M. E. Frischer. 2007. Building a diverse and innovative ocean workforce through collaboration and partnerships that integrate research and education: HBCUs and marine laboratories. Journal of Geoscience Education 55(6): 531-540.  doi: 10.5408/1089-9995-55.6.531
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Goutx, M., S. G. Wakeham, C. Lee, M. Duflos, C. Guigue, Z. Liu, B. Moriceau, R. Sempére, M. Tedetti, and J. Xue. 2007. Composition and degradation of marine particles with different settling velocities in the northwestern Mediterranean Sea. Limnology and Oceanography 52(4): 1645-1664.  doi: 10.4319/lo.2007.52.4.1645
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Jackson, C., C. Alexander, and D. Bush. 2007. Backbarrier shoreline change history:  Cumberland Island, Georgia, 1857-2002. Southeastern Geology 45: 73-85.
Not available online

Jacobsen, A., A. Larsen, J. Martinez-Martinez, P. G. Verity, and M. E. Frischer. 2007. Susceptibility of colonies and colonial cells of Phaeocystis pouchetii  (Haptophyta) to viral infection. Aquatic Microbial Ecology 48(2): 105-112.   doi: 10.3354/ame048105
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Jaeschke, A., E. C. Hopmans, S. G. Wakeham, S. Schouten and J. S. Sinninghe Damsté. 2007. The presence of ladderane lipids in the oxygen minimum zone of the Arabian Sea indicates nitrogen loss through anammox. Limnology and Oceanography 52(2): 780-786.  doi: 10.4319/lo.2007.52.2.0780
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Kattner, G., W. Hagen, R. F. Lee, R. Campbell, D. Diebel, S. Falk-Petersen, M. Graeve, B. W. Hansen, H. J. Hirche, S. H. Jónasdóttir, M. L. Madsen, P. Mayzaud, D. Müller-Navarra, P. D. Nichols, G.-A. Paffenhöfer, D. Pond, H. Saito, D. Stübing, and P. Virtue. 2007. Perspectives on marine zooplankton lipids. Canadian Journal of Fisheries and Aquatic Sciences 64(11): 1628-1639.   doi:  10.1139/F07-122
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Larsen, J. B., M. E. Frischer, K. W. Ockelmann, L. J. Rasmussen, and B. W. Hansen. 2007. Temporal occurrence of planktotrophic bivalve larvae identified morphologically and by single step nested multiplex PCR.  Journal of Plankton Research 29(5): 423-436.   doi: 10.1093/plankt/fbm027
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Long, J. D., M. E. Frischer, and C. Y. Robertson. 2007. A Phaeocystis globosa bloom associated with upwelling in the subtropical South Atlantic Bight. Journal of Plankton Research 29(9): 769-774.   doi: 10.1093/plankt/fbm058
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Minor, E. C., B. J. Dalzell, A. Stubbins, and K. Mopper. 2007. Evaluating the photoalteration of estuarine dissolved organic matter using direct temperature-resolved mass spectrometry and UV-visible spectroscopy. Aquatic Sciences 69(4): 440-455.   doi: 10.1007/s00027-007-0897-y
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Mopper, K., A. Stubbins, J. D. Ritchie, H. M. Bialk, and P. G. Hatcher. 2007. Advanced instrumental approaches for characterization of marine dissolved organic matter:  Extraction techniques, mass spectrometry and nuclear magnetic resonance spectroscopy. Chemical Reviews 107(2): 419-442.  doi:  10.1021/cr050359b
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Muri, G. and S. G. Wakeham. 2007. Organic matter and lipids in sediments of Lake Bled (NW Slovenia): Source and effect of anoxic and oxic depositional regimes. Organic Geochemistry 37: 1644-1679.  doi: 10.1016/j.orggeochem.2006.07.016
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Nejstgaard, J. C., K. W. Tang, M. Steinke, J. Dutz, M. Koski, E. Antajan, and J. D. Long. 2007. Zooplankton grazing on Phaeocystis:  a quantitative review and future challenges. Biogeochemistry 83(1-3): 147-172.  doi:  10.1007/s10533-007-9098-y
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Niencheski, L. F., H. L. Windom, W. S. Moore, and R. A. Jahnke. 2007. Submarine groundwater discharge of nutrients to the ocean along a coastal lagoon barrier, southern Brazil. Marine Chemistry 106(3-4): 546-561.  doi: 10.1016/j.marchem.2007.06.004
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Paffenhöfer, G.-A., B. F. Sherr, and E. B. Sherr. 2007. From small scales to the big picture: persistence mechanisms of planktonic grazers in the oligotrophic ocean. Marine Ecology 28(2): 243-253.  doi:  10.1111/j.1439-0485.2007.00162.x
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Power, C., R. Feldner, B. Scanlon, M. Frischer, and J. Richardson. 2007. Bacterial source tracking in the Vernon River watershed. In Proceedings of the 2007 Georgia Water Resources Conference March 27-29, 2007 University of Georgia, Athens, GA.
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Rampen, S. W., S. Schouten, S. G. Wakeham and J. S. Sinninghe Damsté. 2007. Seasonal and spatial variation in the sources and fluxes of long chain diols and mid-chain hydroxy methyl alkanoates in the Arabian Sea. Organic Geochemistry 38(2): 165-179.  doi: 10.1016/j.orggeochem.2006.10.008
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Rao, A. M. F., M. J. McCarthy, W. S. Gardner, and R. A. Jahnke. 2007. Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: Rates of carbon and nitrogen cycling from sediment column experiments. Continental Shelf Research 27(13): 1801-1819.  doi: 10.1016/j.csr.2007.03.001
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Savidge, D. K., and J. A. Austin. 2007. The Hatteras Front: August 2004 velocity and density structure. Journal of Geophysical Research – Oceans  112 (C07006).   doi:  10.1029/2006JC003933
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Savidge, D. K., C. R. Edwards, and M. Santana. 2007. Baroclinic effects and tides on the Cape Hatteras continental shelf.  Journal of Geophysical Research – Oceans. 112 (C09016): 1-16. doi: 10.1029/2006JC003832
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Savidge, W. B., R. A. Jahnke, J. R. Nelson, D. K. Savidge, G. Voulgaris, R. T. Short, and A. Gargett. 2007. Development of a coastal ocean benthic observatory to study sediment-water exchange processes. In Chemical Pollution and Environmental Changes, ed. S. Tanabe, H Takeoka, T. Isobe and Y. Nishibe, 383-392. Tokyo: Universal Academy Press.
Not available online

Sazhin, A. F., L. F. Artigas, J. C. Nejstgaard, and M. E. Frischer. 2007. The colonization of two Phaeocystis species (Prymnesiophyceae) by pennate diatoms and other protists:  a significant contribution to colony biomass. Biogeochemistry 83(1-3): 137-145.   doi: 10.1007/s10533-007-9086-2
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Seim, H. E., and C. R. Edwards. 2007. Comparison of buoy-mounted and bottom-moored ADCP performance at Gray’s Reef.  Journal of Atmospheric and Oceanic Technology 24(2): 270-284.  doi: 10.1175/JTECH1972.1
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Sommerfield, C. K., A. S. Ogston, B. L. Mullenbach, D. E. Drake, C. R. Alexander, C. A. Nittrouer, J. C. Borgeld, R. A. Wheatcroft, and E. L. Leithold. 2007. Oceanic dispersal and accumulation of river sediment.  In Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy, eds. C. A.  Nittrouer, J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg,  157-212.  IAS Special Publication 37: 608. Oxford: Blackwell Publishing, Ltd.   doi:  10.1002/9781444304398.ch4
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Stewart, G., J. K. Cochran, J. Xue, C. Lee, S. G. Wakeham, R. A. Armstrong, P. Masqué, and J. C. Miquel. 2007. Exploring the connection between 210Po and organic matter in the northwestern Mediterranean. Deep-Sea Research 54(3): 415-427.  doi: 10.1016/j.dsr.2006.12.006
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Townsend-Small, A., J. L. Noguera, M. E. McClain, and J. A. Brandes. 2007. Radiocarbon and stable isotope geochemistry of organic matter in the Amazon headwaters, Peruvian Andes. Global Biogeochemical Cycles 21(2): GB2029.  doi:  10.1029/2006GB002835
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Townsend-Small, A., M. McCarthy, J. Brandes, L. Yang, L. Zhang, and W. Gardner. 2007. Stable isotopic composition of nitrate in Lake Taihu, China, and major inflow rivers. Hydrobiologia 581(1): 135-140.  doi:  10.1007/s10750-006-0505-5
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Troedsson, C., M. E. Frischer, J. C. Nejstgaard, and E. M. Thompson. 2007. Molecular quantification of differential ingestion and particle trapping rates by the appendicularian Oikopleura dioica as a function of prey size and shape. Limnology and Oceanography 52(1): 416-427.  doi:  10.4319/lo.2007.52.1.0416
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Turich, C. H., K. H. Freeman, M. A. Bruns, M. Conte, A. D. Jones, and S. G. Wakeham. 2007. Lipids of marine Archaea:  Patterns and provenance in the water-column and sediments. Geochimica et Cosmochimica Acta 71(13): 3272-3291.   https://doi.org/10.1016/j.gca.2007.04.013
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van Rijssel, M., A -C. Alderkamp, J. Nejstgaard, A. Sazhin, and P. Verity. 2007. Haemolytic activity of live Phaeocystis pouchetiiduring mesocosm blooms. Biogeochemistry 83(1-3): 189-200.  doi: 10.1007/s10533-007-9095-1
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Verity, P. G., C. P. Brussaard, J. C. Nejstgaard, M. A. van Leeuwe, C. Lancelot, and L. K. Medlin. 2007. Current understanding of Phaeocystis ecology and biogeochemistry, and perspectives for future research. Biogeochemistry 83(1-3): 311-330.   doi: 10.1007/s10533-007-9090-6
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Verity, P. G., M. J. Zirbel, J. C. Nejstgaard. 2007. Formation of very young colonies by Phaeocystis pouchetii  from western Norway.  Aquatic Microbial Ecology 47(3): 267-274.  doi: 10.3354/ame047267
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Verity, P.G., S.J. Whipple, J.C. Nejstgaard, A.-C.Alderkamp. 2007. Colony size, cell number, carbon and nitrogen contents of Phaeocystis pouchetii  from western Norway.  Journal of Plankton Research 29(4): 359-367.  doi:  10.1093/plankt/fbm021
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Wakeham, S.G., R. Amann, K. H. Freeman, E. C. Hopmans, B. B. Jørgensen, I. F. Putnam, S. Schouten, J. S. Sinninghe Damsté, H. M. Talbot, and D. Woebken. 2007. Microbial ecology of the stratified water column of the Black Sea as revealed by a comprehensive biomarker study. Organic Geochemistry 38(12): 2070-2097.  doi: 10.1016/j.orggeochem.2007.08.003
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Walsh, J. P., C. R. Alexander, T. Gerber, A. R. Orpin, and B. W. Sumners. 2007. Demise of a submarine canyon?  Evidence for highstand infilling on the Waipaoa River continental margin, New Zealand.  Geophysical Research Letters 34(20): L20606.  doi: 10.1029/2007GL031142
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Webster, J. W., G. A. Brook, L. B. Railsback, H. Cheng, R. L. Edwards, C. R. Alexander and P. P. Reeder. 2007. Stalagmite evidence from Belize indicating significant droughts at the time of Preclassic Abandonment, the Maya Hiatus, and the Classic Maya collapse. Palaeogeography, Palaeoclimatology, Palaeoecology 250(1-4): 1-17.   doi: 10.1016/j.palaeo.2007.02.022
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Wheatcroft, R. A., P. L. Wiberg, C. R. Alexander, S. J. Bentley, D. E. Drake, C. K. Harris, and A. S. Ogston. 2007. Post-depositional alteration and preservation of sedimentary strata. In Continental-Margin Sedimentation: from Sediment Transport to Sequence Stratigraphy, eds. C. A.  Nittrouer, J. A. Austin, Jr., M. E. Field, J. H. Kravitz, J. P. M. Syvitski, and P. L. Wiberg, 101-155.  IAS Special Publication 37: 608. Oxford: Blackwell Publishing, Ltd.   doi:  10.1002/9781444304398.ch3
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Whipple, S. J., B. C. Patten, P. G. Verity, M. E. Frischer, J. D. Long, J. C. Nejstgaard, J. T. Anderson, A. Jacobsen, A. Larsen, J. Martinez-Martinez, and S. R. Borrett. 2007. Gaining integrated understanding of Phaeocystis spp. (Prymnesiophyceae) through model-driven laboratory and mesocosm studies. Biogeochemistry 83(1-3): 293-309.   doi: 10.1007/s10533-007-9089-z
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Windom, H. L., W. Moore, and F. Niencheski. 2007. Influence of groundwater discharge through a coastal sandy barrier in southern Brazil on sea water metal chemistry. In A new focus on groundwater-seawater interaction, eds. W. Sanford, C. Langerin. M. Polemio, and P. Povinea,  180-188. IAH International Commission on Groundwater, General Assembly, IUGG, Perugia, Italy, July 2007. IAHS Publication, 0144-7815; Publication 312.
Not available online

2006

Alderkamp, A.-C., J. C. Nejstgaard, P. G. Verity, M. J. Zirbel, A. F. Sazhin, and M. van Rijssel.  2006. Dynamics in carbohydrate composition of Phaeocystis pouchetii colonies during spring blooms in mesocosms.  Journal of Sea Research 55(3): 169-181.  https://doi.org/10.1016/j.seares.2005.10.005
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Bianchi, T. S., M. A. Allison, E. A. Canuel, D. R. Corbett, B. A. McKee, T. P. Sampere, S. G. Wakeham and E. Waterson. 2006. Rapid export of organic matter to the Mississippi Canyon.  EOS Transactions 87(50): 565, 572-573.  doi:  10.1029/2006EO500002
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Blanton, J. O., F. Andrade, and M. A. Ferreira.  2006. The relationship of hydrodynamics to morphology in tidal creek and salt marsh systems of South Carolina and Georgia. In Changing land use patterns in the coastal zone, ed. G. S.Kleppel, M. R. DeVoe, and M. V. Rawson, 93-107. New York: Springer Series on Environmental Management, Springer-Verlag.  doi: 10.1007/0-387-29023-0_5
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Buck, C. S., W. M. Landing, J. A. Resing, and G. T. Lebon. 2006. Aerosol iron and aluminum solubility in the northwest Pacific Ocean: Results from the 2002 IOC cruise. Geochemistry Geophysics Geosystems 7, Q04M07.  doi: 10.1029/2005GC000977
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Coolen, M. J. L., A. Boere, B. Abbas, M. Baas, S. G. Wakeham, and J. S. Sinninghe Damsté. 2006. Ancient DNA derived from alkenone-biosynthesizing haptophytes and other algae in Holocene sediments from the Black Sea.  Paleoceanography 21(1):  PA1005.  doi: 10.1029/2005PA001188
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Devol, A. H., A. G. Uhlenhopp, S. W. A. Naqvi, J. A. Brandes, D. A. Jayakumar, H. Naik, S. Gaurin, L. A. Codispoti, and T. Yoshinari. 2006. Denitrification rates and excess nitrogen gas concentrations in the Arabian Sea oxygen deficient zone.  Deep Sea Research Part I: Oceanographic Research Papers  53(9): 1533-1547.  doi: 10.1016/j.dsr.2006.07.005
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Dickens, A. F., J. A. Baldock, R. J. Smernik, S. G. Wakeham, T. S. Arnarson, Y. Gélinas, and J. I. Hedges. 2006. Solid-state 13C NMR analysis of size and density fractions of marine sediments:  Insight into organic carbon sources and preservation mechanisms. Geochimica et Cosmochimica  Acta  70(3): 666-686.  doi: 10.1016/j.gca.2005.10.024
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Frischer, M. E. 2006.  SkIO scientists solve a mystery. What’s eating the blue crab. The Skinnie  4(15): 35-36.
Not available online

Frischer, M. E., and P. G. Verity. 2006. Alternatives to coliform bacteria as indicators of human impact on coastal ecosystems. In Changing land use patterns in the coastal zone, ed. G. S. Kleppel, M. R. DeVoe, and M. V. Rawson, 253-284. New York: Springer Series on Environmental Management, Springer Verlag.    doi:  10.1007/0-387-29023-0_11
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Frischer, M. E., R. F. Lee, M. A. Sheppard, A. Mauer, F. Rambow, M. Neumann, J. E. Brofft, T. Wizenmann, and J. M. Danforth. 2006. Evidence for a free-living life stage of the blue crab parasitic dinoflagelate, Hematodinium sp. Harmful Algae 5(5): 548-557.   doi: 10.1016/j.hal.2005.11.002
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Haberstroh, P. R., J. A. Brandes, Y. Gélinas, A. F. Dickens, S. Wirick, and G. Cody. 2006. Chemical composition of the graphitic black carbon fraction in riverine and marine sediments at sub-micron scales using carbon X-ray spectromicroscopy.  Geochimica et Cosmochimica Acta 70(6): 1483-1494.  doi: 10.1016/j.gca.2005.12.001
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Kitidis. V., A. P. Stubbins, G. Uher, R. C. Upstill Goddard, C. S. Law, and E. M. S. Woodward.  2006. Variability of chromophoric organic matter in surface waters of the Atlantic Ocean. Deep Sea Research Part II: Topical Studies in Oceanography 53(14-16): 1666-1684.  doi: 10.1016/j.dsr2.2006.05.009
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Lee, R. F., and K. A. Maruya. 2006. Chemical contaminants entering estuaries in the South Atlantic Bight as a result of current and past land use. In Changing land use patterns in the coastal zone, ed. G.S. Keppel, M. R. DeVoe and M. V. Rawson, 205-227. New York: Springer Series on Environmental Management, Springer Verlag.  doi: 10.1007/0-387-29023-0_9
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Lin, X., S. G. Wakeham, I. F. Putnam, Y. M. Astor, M. I. Scranton, A. Y. Chistoserdov, and G. T. Taylor. 2006. Comparison of vertical distributions of prokaryotic assemblages in the anoxic Cariaco Basin and Black Sea by use of fluorescence in situ hybridization. Applied and Environmental Microbiology 72(4): 2679-2690.  doi: 10.1128/AEM.72.4.2679-2690.2006
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Liu, Z., C. Lee, and S. G. Wakeham. 2006. Effects of mercuric chloride and protease inhibitors on degradation of particulate organic matter from the diatom Thalassiosira pseudonana.  Organic Geochemistry 37(9): 1003-1018.    doi: 10.1016/j.orggeochem.2006.05.013
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Moore, W. S., J. O. Blanton, and S. B. Joye. 2006. Estimates of flushing times, submarine groundwater discharge, and nutrient fluxes to Okatee Estuary, South Carolina. Journal of Geophysical Research 111(C9): C09006. doi: 10.1029/2005JC003041
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Muri, G., S. G. Wakeham, and N. L. Rose. 2006. Records of atmospheric delivery of pyrolysis-derived pollutants in recent mountain lake sediments of the Julian Alps (NW Slovenia).  Environmental Pollution 139(3): 461-468.  doi: 10.1016/j.envpol.2005.06.002
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Nejstgaard, J. C., M. E. Frischer, P. G. Verity, J. T. Anderson, A. Jacobsen, M. J. Zirbel, A. Larsen, J. Martinez-Martinez, A. F. Sazhin, T. Walters, D. A. Bronk, S. J. Whipple, S. R. Borrett, B. C. Patten, and J. D. Long. 2006. Plankton development and trophic transfer in seawater enclosures with nutrients and Phaeocystis pouchetii added. Marine Ecology Progress Series 321: 99-121. doi: 10.3354/meps321099
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Orpin, A. R., C. Alexander, L. Carter, S. Kuehl, and J. P. Walsh. 2006. Temporal and spatial complexity in post-glacial sedimentation on the tectonically active, Poverty Bay continental margin of New Zealand. Continental Shelf Research 26 (17-18): 2205-2224.  doi: 10.1016/j.csr.2006.07.029
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Paffenhöfer, G. -A. 2006. Oxygen consumption in relation to motion of marine planktonic copepods. Marine Ecology Progress Series 317: 187-192.  doi: 10.3354/meps317187
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Paffenhöfer, G. -A., M.G. Mazzocchi and M.W. Tzeng. 2006. Living on the edge:  feeding of subtropical open ocean copepods. Marine Ecology 27(2): 99-108.   doi: 10.1111/j.1439-0485.2006.00086.x
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Schubert, C. J., M. J. L. Coolen, L. N. Neretin, A. Schippers, B. Abbas, E. Durisch-Kaiser, B. Wehrli, E. C. Hopmans, J. S. Sinninghe Damsté, S. Wakeham, and M. M. M. Kuypers. 2006. Aerobic and anaerobic methanotrophs in the Black Sea water column. Environmental Microbiology 8(10): 1844-1856. doi: 10.1111/j.1462-2920.2006.01079.x
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Seim, H. E., J. O. Blanton, and S. Elston. 2006. Tidal circulation and energy dissipation in a shallow, sinuous estuary. Ocean Dynamics 56(3-4): 360-375.  doi: 10.1007/s10236-006-0078-x
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Stubbins, A., G. Uher, C. S. Law, K. Mopper, C. Robinson, and R. C. Upstill-Goddard.  2006. Open-ocean carbon monoxide photoproduction.  Deep Sea Research Part II: Topical Studies in Oceanography  53(14-16): 1695-1705.  https://doi.org/10.1016/j.dsr2.2006.05.011
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Stubbins, A., G. Uher, V. Kitidis, C. S. Law, R. C. Upstill-Goddard, and E. M. S Woodward.  2006. The open-ocean source of atmospheric carbon monoxide.   Deep Sea Research Part II: Topical Studies in Oceanography  53(14-16): 1685-1694.  https://doi.org/10.1016/j.dsr2.2006.05.010
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Troedsson, C., M. E. Frischer, J. C. Nejstgaard, and E. M. Thompson. 2006. Molecular quantification of differential ingestion and particle trapping rates by the appendicularian Oikopleura dioica as a function of prey size and shape.  Limnology and Oceanography 52(1): 416-427.  doi: 10.4319/lo.2007.52.1.0416
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Troedsson, C., R. F. Lee, V. Stokes, T. L. Walters, P. Simonelli, and M. E. Frischer. 2006. Development of a denaturing high-performance liquid chromatography method for detection of protist parasites of metazoans. Applied and Environmental Microbiology 74(14): 4336-4345.  doi: 10.1128/AEM.02131-07
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Wakeham, S. G. , A. P. McNichol, J. E. Kostka, and T. K. Pease. 2006. Natural-abundance radiocarbon as a tracer of assimilation of petroleum carbon by bacteria in salt marsh sediments. Geochimica et  Cosmochimica Acta 70(7): 1761-1771.  doi: 10.1016/j.gca.2005.12.020
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Wakeham, S. G., and E. A. Canuel. 2006. Degradation and preservation of organic matter in marine sediments. In  Marine organic matter: Biomarkers, isotopes and DNA, Vol. 2N, Reactions and processes, ed. J. K. Volkman, 295-321. Berlin:  The Handbook of Environmental Chemistry Series, Springer-Verlag.   doi: 10.1007/698_2_009
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Windom, H., W. S. Moore, L. F. Niencheski, and R. Jahnke. 2006. Submarine groundwater discharge:  A  large, previously unrecognized source of dissolved iron to the South Atlantic Ocean. Marine Chemistry 102(3-4): 252-266.  doi: 10.1016/j.marchem.2006.06.016
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Wuchter, C., S. Schouten, S. G. Wakeham, and J. S. Sinninghe Damsté. 2006. Archaeal tetraether membrane lipid fluxes in the northeastern Pacific and the Arabian Sea: Implications for TEX86 paleothermometry. Paleoceanography 21(4): PA4208.  doi: 10.1029/2006PA001279
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2005

Alexander, C. R., R. F. Lee, D. T. Burton, and L. W. Hall Jr. 2005. An integrated case study for evaluating the impacts of an oil refinery effluent on aquatic biota in the Delaware River: Sediment core studies. Human and Ecological Risk Assessment:  An International Journal  11(4): 861-877.  doi: 10.1080/10807030591009034
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Allen, A. E., M. G. Booth, P. G. Verity, and M. E. Frischer. 2005. Influence of nitrate availability on the distribution and abundance of heterotrophic bacterial nitrate assimilation genes in the Barents Sea during summer. Aquatic Microbial Ecology 39(3): 247-255.  doi: 10.3354/ame039247
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Arnold, W. S., G. L. Hitchcock, M. E. Frischer, R. Wanninkhof, and Y. P. Sheng. 2005. Dispersal of an introduced larval cohort in a coastal lagoon. Limnology and Oceanography 50(2): 587-597.  doi: 10.4319/lo.2005.50.2.0587
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Engel, A., I. Zondervan, K. Aerts, L. Beaufort, A. Benthien, L. Chou, B. Delille, J.-P. Gattuso, J. Harlay, C. Heemann, L. Hoffmann, S. Jacquet, J. Nejstgaard, M.-D. Pizay, E. Rochelle-Newall, U. Schneider, A. Terbrueggen, and U. Riebesell. 2005. Testing the direct effect of CO2 concentration on a bloom of the coccolithophorid Emiliania huxleyi in mesocosm experiments. Limnology and  Oceanography 50(2): 493-507.  doi: 10.4319/lo.2005.50.2.0493
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Frischer, M. E., B. R. McGrath, A. S. Hansen, P. A. Vescio, J. A. Wyllie, J. Wimbush, and S. A. Nierzwicki-Bauer. 2005. Introduction pathways, differential survival of adult and larval zebra mussels (Dreissena polymorpha), and possible management strategies, in an Adirondack lake, Lake George, NY.  Lake and Reservoir Management 21(4): 391-402. doi: 10.1080/07438140509354444
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Frischer, M. E., J. M. Danforth, T. F. Foy, and R. Juraske. 2005. Bioluminescent bacteria as indicators of chemical contamination of coastal waters. Journal of Environmental Quality 34(4): 1328-1336.  doi: doi:10.2134/jeq2004.0245
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Frischer, M. E., and M. Sullivan. 2005.  Marsh Grass Making a Comeback.  The Landings Journal. Savannah, GA.  September 2005: 1, cont. on page 8.
Not available online

Gulick, S. P. S., J. A. Goff, J. A. Austin, C. R. Alexander, S. Nordfjord, and C. S. Fulthorpe. 2005. Basal inflection-controlled shelf-edge wedges off New Jersey track sea-level fall. Geology 33(5): 429-432.

Jahnke, R., M. Richards, J. Nelson, C. Robertson, A. Rao, and D. Jahnke. 2005. Organic matter remineralization and porewater exchange rates in permeable South Atlantic Bight continental shelf sediments. Continental Shelf Research 25(12-13): 1433-1452.  doi:  10.1016/j.csr.2005.04.002
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Jahnke, R. A. 2005. Transport processes and organic matter cycling in coastal sediments. In The sea, Vol. 13, The global coastal ocean:  Multiscale interdisciplinary processes, ed. A. R. Robinson, and K. H. Brink, 163-191. Boston:  Harvard University Press.

Kendall, M. S., O. P. Jensen, C. R. Alexander, D. Field, G. McFall, R. Bohne, and M. E. Monaco. 2005. Benthic mapping using sonar, video transects, and an innovative approach to accuracy assessment:  A characterization of bottom features in the Georgia Bight. Journal of Coastal Research 21(6): 1154-1165.  Stable URL:   http://www.jstor.org/stable/4299522
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Larsen, J. B., M. E. Frischer, L. J. Rasmussen, and B. W. Hansen. 2005. Single-step nested multiplex PCR to differentiate between various bivalve larvae. Marine Biology 146(6): 1119-1129.  doi:  10.1007/s00227-004-1524-2
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Paffenhöfer G. -A., A. Ianora, A. Miralto, J. T. Turner, G. S. Kleppel, M. R. d’Alcalà, R. Casotti, G. S. Caldwell, G. Pohnert, A. Fontana, D. Müller-Navarra, S. Jónasdóttir, V. Armbrust, U. Båmstedt, S. Ban, M. G. Bentley, M. Boersma, M. Bundy, I. Buttino, A. Calbet, F. Carlotti, Y. Carotenuto, G. d’Ippolito, B. Frost, C. Guisande, W. Lampert, R. F. Lee, S. Mazza, M. G. Mazzocchi, J. C. Nejstgaard, S. A. Poulet, G. Romano, V. Smetacek, S. Uye, S. Wakeham, S. Watson, and T. Wichard. 2005. Colloquium on diatom-copepod interactions. Marine Ecology Progress Series 286:293-305.  doi:  10.3354/meps286293
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Peterson, M. L., S. G. Wakeham, C. Lee, M. A. Askea, and J. C. Miquel. 2005. Novel techniques for collection of sinking particles in the ocean and determining their settling rates. Limnology and Oceanography: Methods 3(12): 520-532.  doi: 10.4319/lom.2005.3.520
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Queiroga, H., and J. Blanton. 2005. Interactions between behaviour and physical forcing in the control of horizontal transport of decapod crustacean larvae. Advances in Marine Biology 47:107-214.  doi:   10.1016/S0065-2881(04)47002-3
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Savidge, W. B., and N. E. Blair. 2005. Intramolecular carbon isotopic composition of monosodium glutamate:  Biochemical pathways and product source identification.  Journal of Agricultural and Food Chemistry 53(2): 197-201. doi:  10.1021/jf040200k
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Townsend-Small, A., M. E. McClain, and J. A. Brandes. 2005. Contributions of carbon and nitrogen from the Andes Mountains to the Amazon River:  Evidence from an elevational gradient of soils, plants, and river material.  Limnology and Oceanography 50(3): 672-685.   doi: 10.4319/lo.2005.50.2.0672
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Wuchter, C., S. Schouten, S. G. Wakeham, and J. S. Sinninghe Damsté. 2005. Temporal and spatial variation in tetraether membrane lipids of marine Crenarchaeota in particulate organic matter: Implications for TEX86 paleothermometry. Paleoceanography 20(3): PA3013. doi: 10.1029/2004PA001110
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2004

Aksnes, D. L., J. Nejstgaard, E. Sædberg, and T. Sørnes. 2004. Optical control of fish and zooplankton populations. Limnology and Oceanography 49(1): 233-238.  doi:  10.4319/lo.2004.49.1.0233
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Armstrong, E., J. Granger, E. L. Mann, and N. M. Price. 2004. Outer membrane siderophore receptors of heterotrophic oceanic bacteria. Limnology and Oceanography 49(2): 579-587.  doi: 10.4319/lo.2004.49.2.0579
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Benner, R. H. , C. Lee and S. G. Wakeham, eds. 2004. Symposium on new approaches in marine organic biogeochemistry:  A tribute to the life and science of John I. Hedges. Marine Chemistry 92(1-4):  1-3.  doi: 10.1016/j.marchem.2004.06.013
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Brandes, J. A., C. Lee, S. Wakeham, M. Peterson, C. Jacobsen, S. Wirick, and G. Cody. 2004. Examining marine particulate organic matter at sub-micron scales using scanning transmission X-ray microscopy and carbon X-ray absorption near edge structure spectroscopy.  Marine Chemistry 92(1-4): 107-121. doi:  10.1016/j.marchem.2004.06.020
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Cody, G. D., N. Z. Boctor, J. A. Brandes, T. R. Filley, R. M. Hazen and H. S. Yoder Jr. 2004. Assaying the catalytic potential of transition metal sulfides for abiotic carbon fixation. Geochimica et Cosmochimica Acta 68(10): 2185–2196.   doi:  10.1016/j.gca.2003.11.020
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Dickens, A. F., Y. Gélinas, C. A. Masiello, S. Wakeham and J. I. Hedges. 2004. Reburial of fossil organic carbon in marine sediments. Nature  427(6972): 336-339.  doi:  10.1038/nature02299
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Furukawa, Y., A. C. Smith, J. E. Kostka, J. Watkins, and C. R. Alexander. 2004. Quantification of macrobenthic effects on diagenesis using a multicomponent inverse model in salt marsh sediments. Limnology and Oceanography  49(6): 2058-2072.  doi: 10.4319/lo.2004.49.6.2058
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Ingalls, A. E., R. C. Aller, C. Lee, and S. G. Wakeham. 2004. Organic matter diagenesis in shallow water carbonate sediments. Geochimica et Cosmochimica Acta 68(21): 4363-4379.  doi: 10.1016/j.gca.2004.01.002
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Jahnke, R. A., and D. B. Jahnke. 2004. Calcium carbonate dissolution in deep sea sediments: reconciling microelectrode, pore water and benthic flux chamber results. Geochimica et Cosmochimica Acta 68(1): 47-59.  doi: 10.1016/S0016-7037(03)00260-6
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Jiang, H., and G. -A. Paffenhöfer. 2004. Relation of behavior of copepod juveniles to potential predation by omnivorous copepods:  An empirical-modeling study. Marine Ecology Progress Series 278:225-239.  doi:  10.3354/meps278225
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Lee, C., S. G. Wakeham, and C. Arnosti. 2004. Particulate organic matter in the sea: the composition conundrum. Ambio 33:565-575.    Stable URL: http://www.jstor.org/stable/4315547
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Lee, R. F., and M. E. Frischer. 2004. The decline of the blue crab: Changing weather patterns and a suffocating parasite may have reduced the numbers of this species along the Eastern seaboard.  American Scientist 92(6): 548-553.  Stable URL: http://www.jstor.org/stable/27858483
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Lee, R. F., M. E. Frischer, and A. Walker. 2004. Drought associated epidemic of a blue crab disease in coastal Georgia USA. In Proceedings of International Symposium on Long-term Variations in the Coastal Environments and Ecosystems 27-28 September 2004. Matsuyama, Japan.

Massé, G., S. T. Belt, W. G. Allard, C. A. Lewis, S. G. Wakeham, and S. J. Rowland. 2004. Occurrence of novel monocyclic alkenes from diatoms in marine particulate matter and sediments. Organic Geochemistry 35(7): 813-822.  doi: 10.1016/j.orggeochem.2004.03.004
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Muri, G., S. G. Wakeham, T. K. Pease, and J. Faganeli. 2004. Evaluation of lipid biomarkers as indicators of changes in organic matter delivery to sediments from Lake Planina, a remote mountain lake in NW Slovenia. Organic Geochemistry 35(10): 1083-1093.  doi:  10.1016/j.orggeochem.2004.06.004
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Savidge, D. K. 2004. Gulf Stream meander propagation past Cape Hatteras.  Journal of Physical Oceanography 34(9): 2073-2085.  doi:  10.1175/1520-0485(2004)034<2073:GSMPPC>2.0.CO;2
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Savidge, W. B., and N. E. Blair. 2004. Patterns of intramolecular carbon isotopic heterogeneity within amino acids of autotrophs and heterotrophs. Oecologia 139(2): 178-189.  doi: 10.1007/s00442-004-1500-z
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Savidge, W. B., and N. E. Blair. 2004. Seasonal and within-plant gradients in the intramolecular carbon isotopic composition of amino acids of Spartina alterniflora. Journal of Experimental Marine Biology and Ecology 308(2): 151-167.  doi: 10.1016/j.jembe.2004.02.010
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Sharp, J. H., A. Y. Beauregard, D. Burdige, G. Cauwet, S. Curless, R. Lauck, K. Nagel, H. Ogawa, A. E. Parker, O. Primm, M. Pujo-Pay, W. B. Savidge, S. Seitzinger, G. Spyres, and R. Styles. 2004. A direct instrument comparison for measurement of total dissolved nitrogen in seawater. Marine Chemistry 84(3-4): 181-193.  doi: 10.1016/j.marchem.2003.07.003
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Wakeham, S. G. 2004. Reading the molecular Rosetta Stone: molecular clues on the origin and diagenesis of organic matter. Marine Chemistry 92(1-4): 235-237. doi: 10.1016/j.marchem.2004.06.028
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Wakeham, S. G., E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2004. Archaeal lipids and anaerobic oxidation of methane in euxinic water columns: a comparative study of the Black Sea and Cariaco Basin. Chemical Geology 205(3-4): 427-442. doi:  10.1016/j.chemgeo.2003.12.024
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Wakeham, S. G., J. Forrest, C. A. Masiello, Y. Gélinas, C. R. Alexander, and P. R. Leavitt. 2004. Hydrocarbons in Lake Washington sediments: A 25-year retrospective in an urban lake. Environmental Science and Technology 38(2): 431-439. doi:  10.1021/es0343149
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2003

Alexander, C. R., and C. Venherm. 2003. Modern sedimentary processes in the Santa Monica, California continental margin: sediment accumulation, mixing and budget. Marine Environmental Research 56(1-2): 177-204. doi: 10.1016/S0141-1136(02)00330-6
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Allard, R. A., C. A. Blain, L. F. Smedstad, T. Keen, A. J. Wallcraft, C. N. Barren, J. D. Dykes, C. R. Edwards, B. D. Estrade, M. Bettencourt, G. Peggion, S. Howington, J. M. Smith, W. E. McBride, and R. P. Signell. 2003. High fidelity simulation of littoral environments: applications and coupling of participating models. In 2003 Users Group Conference: Proceedings: June 9 to 13, 2003, Bellevue, WA, 306-313. Los Alamitos, Ca: IEEE Computer Society.  doi:  10.1109/DODUGC.2003.1253408
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Blanton, J., H. Seim, C. Alexander, J. Amft, and G. Kineke. 2003. Transport of salt and suspended sediments in a curving channel of a coastal plain estuary: Satilla River, GA.  Estuarine, Coastal and Shelf Science 57(5-6): 993-1006. doi: 10.1016/S0272-7714(03)00005-2
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D’Elia, C. F., W. R. Boynton, and J. G. Sanders. 2003. A watershed perspective on nutrient enrichment, science, and policy in the Patuxent River, Maryland: 1960-2000. Estuaries 26(2): 171-185. Stable URL: http://www.jstor.org/stable/1353118
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Edwards, C. R., P. Hwang, and C. A. Blain. 2003. Application of non-stationary time series analysis techniques to Mississippi Sound data.  Journal of the Mississippi Academy of Sciences 48(1): 62-63.

Haberer, J. L., and J. A. Brandes. 2003. A high sensitivity, low volume HPLC based method to determine soluble reactive phosphate (SRP) in freshwater and saltwater. Marine Chemistry 82 (3-4):  185-196. doi: 10.1016/S0304-4203(03)00069-0
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Helland, S., J. C. Nejstgaard, H. J. Fyhn, J. K. Egge, and U. Båmstedt. 2003. Effects of starvation, season, and diet on the free amino acid and protein content of Calanus finmarchicus females. Marine Biology 143(2): 297-306. doi: 10.1007/s00227-003-1092-x
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Helland, S., J. C. Nejstgaard, R. Humlen, H. J. Fyhn, and U. Båmstedt. 2003. Effects of season and maternal food on Calanus finmarchicus reproduction, with emphasis on free amino acids. Marine Biology 142(6): 1141-1151. doi: 10.1007/s00227-003-1045-4
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Ingalls, A. E., C. Lee, S. G. Wakeham, and J. I. Hedges. 2003. The role of biominerals in the sinking flux and preservation of amino acids in the Southern Ocean along 170ºW. Deep Sea Research Part II: Topical Studies in Oceanography 50(3-4): 713-738. doi: 10.1016/S0967-0645(02)00592-1
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Jahnke, R. A., C. R. Alexander, and J. E. Kostka. 2003. Advective pore water input of nutrients to the Satilla River Estuary, Georgia, USA.  Estuarine, Coastal and Shelf Science 56(3-4): 641-653. doi: 10.1016/S0272-7714(02)00216-0
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Langley, S, K., C. R. Alexander, D. M. Bush, and C. W. Jackson. 2003. Modernizing shoreline change analysis in Georgia using topographic survey sheets in a GIS environment.  Journal of Coastal Research, Special Issue No. 38, Shoreline Mapping and Change Analysis: Technical Considerations and Management Implications, pp. 168-177.  Stable URL: http://www.jstor.org/stable/25736605
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Lee, R. F., and S. Steinert. 2003. Use of the single cell gel electrophoresis/comet assay for detecting DNA damage in aquatic (marine and freshwater) animals. Mutation Research/Reviews in Mutation Research 544(1): 43-64. doi: 10.1016/S1383-5742(03)00017-6
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Martinez, J. S., J. N. Carter-Franklin, E. L. Mann, J. D. Martin, M. G. Haygood, and A. Butler. 2003. Structure and membrane affinity of a suite of amphiphilic siderophores produced by a marine bacterium. Proceedings of the National Academy of Sciences 100(7): 3754-3759. doi: 10.1073/pnas.0637444100
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Minor, E. C., S. G. Wakeham, and C. Lee. 2003. Changes in the molecular-level characteristics of sinking marine particles with water column depth. Geochimica et Cosmochimica Acta 67(22): 4277-4288. doi: 10.1016/S0016-7037(03)00263-1
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Muri, G., S. G. Wakeham, and J. Faganeli. 2003. Polycyclic aromatic hydrocarbons and black carbon in sediments of a remote alpine lake (Lake Planina, northwest Slovenia). Environmental Toxicology and Chemistry 22(5): 1009-1016. doi: 10.1002/etc.5620220508
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Nejstgaard, J. C., M. E. Frischer, C. L. Raule, T. Gruebel, K. E. Kohlberg, and P. G. Verity. 2003. Molecular detection of algal prey in copepod guts and fecal pellets. Limnology and Oceanography: Methods 1(1): 29-38.  doi: 10.4319/lom.2003.1.29
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Riedel, G. F., and J. G. Sanders. 2003. The interrelationships among trace element cycling, nutrient loading, and system complexity in estuaries: A mesocosm study. Estuaries 26 (2A): 339-351. Stable URL: http://www.jstor.org/stable/1353130
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Riedel, G. F., J. G. Sanders, and D. L. Breitburg. 2003. Seasonal variability in response of estuarine phytoplankton communities to stress: Linkages between toxic trace elements and nutrient enrichment. Estuaries 26(2A): 323-338.  Stable URL:  http://www.jstor.org/stable/1353129
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Schouten, S., S. G. Wakeham, E. C. Hopmans, and J. S. Sinninghe Damsté. 2003. Biogeochemical evidence that thermophilic archaea mediate the anaerobic oxidation of methane. Applied and Environmental Microbiology 69(3): 1680-1686. doi:  10.1128/AEM.69.3.1680-1686.2003
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Sheppard, M., A. Walker, M. E. Frischer, and R. F. Lee. 2003. Histopathology and prevalence of the parasitic dinoflagellate, Hematodinium sp., in crabs (Callinectes sapidus, Callinectes similis, Neopanope sayi, Libinia emarginata, Menippe mercenaria) from a Georgia estuary. Journal of Shellfish Research 22(3): 873-880.    Stable URL:  https://biodiversitylibrary.org/page/3105791
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Sigman, D. M., R. Robinson, A. N. Knapp, A. van Geen, D. C. McCorkle, J. A. Brandes, and R. C. Thunell. 2003. Distinguishing between water column and sedimentary denitrification in the Santa Barbara Basin using the stable isotopes of nitrate. Geochemistry Geophysics Geosystems  4(5): 1040. doi: 10.1029/2002GC000384
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Svensen, C., and J. C. Nejstgaard. 2003. Is sedimentation of copepod faecal pellets determined by cyclopoids? Evidence from enclosed ecosystems. Journal of Plankton Research 25(8): 917-926.  doi: 10.1093/plankt/25.8.917
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Wakeham, S. G., C. M. Lewis, E. C. Hopmans, S. Schouten, and J. S. Sinninghe Damsté. 2003. Archaea mediate anaerobic oxidation of methane in deep euxinic waters of the Black Sea. Geochimica et Cosmochimica Acta 67(7): 1359-1374. doi: 10.1016/S0016-7037(02)01220-6
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Wakeham, S. G., T. K. Pease, and R. Benner. 2003. Hydroxy fatty acids in marine dissolved organic matter as indicators of bacterial membrane material. Organic Geochemistry 34(6): 857-868. doi: 10.1016/S0146-6380(02)00189-4
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Windom, H., and F. Niencheski. 2003. Biogeochemical processes in a freshwater–seawater mixing zone in permeable sediments along the coast of Southern Brazil. Marine Chemistry 83(3-4):121-130. doi: 10.1016/S0304-4203(03)00106-3
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